genome.fa.s7980.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007980.1 Hibiscus syriacus cultivar Beakdansim tig00110419_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1499237

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 886 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414557--1414598	13	2.9	14	82	13	50	76	0	0	23	0.79
1415188--1415232	23	2.0	23	82	8	56	40	13	6	40	1.71
1415507--1415532	2	13.0	2	100	0	52	50	0	0	50	1.00
1419060--1419104	22	2.0	23	91	4	74	33	0	2	64	1.06
1419062--1419133	37	2.0	34	87	12	101	36	0	2	61	1.11
1419135--1419181	24	1.9	24	87	12	69	38	0	0	61	0.96
1420905--1421010	42	2.5	42	84	0	140	26	33	15	24	1.95
1420992--1421058	21	3.2	21	80	0	71	23	32	23	19	1.97
1422024--1422070	20	2.4	21	82	13	64	46	21	0	31	1.51
1422073--1422697	139	4.5	139	83	2	754	34	24	17	23	1.96
1427992--1428044	20	2.7	20	82	8	63	32	15	32	20	1.93
1428069--1428122	19	2.7	20	82	8	65	31	18	20	29	1.96
1428069--1428139	22	3.5	22	83	9	80	29	16	23	29	1.97
1428462--1428745	54	5.3	54	92	0	451	26	17	21	34	1.95
1428462--1428801	162	2.1	162	83	0	428	27	17	21	34	1.95
1434794--1434845	19	2.7	19	84	3	68	32	15	32	19	1.93
1434870--1434929	22	2.9	22	80	7	63	30	15	23	31	1.95
1435265--1435658	54	7.3	54	84	0	459	27	16	21	34	1.95
1443393--1443476	3	28.0	3	95	0	150	34	1	0	64	1.02
1444004--1444045	15	2.8	15	89	7	59	76	2	21	0	0.90
1444004--1444045	20	2.1	20	86	8	59	76	2	21	0	0.90
1444217--1444247	13	2.4	13	94	0	53	0	25	64	9	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1445607--1445656	24	2.1	23	85	3	64	34	2	2	62	1.18
1448943--1448974	15	2.1	15	94	0	55	25	18	9	46	1.79
1456296--1456343	9	5.1	9	90	9	78	85	0	14	0	0.60
1456297--1456342	10	4.7	10	89	5	76	89	0	10	0	0.50
1456296--1456343	19	2.5	19	96	0	87	85	0	14	0	0.60
1457637--1458508	83	10.6	83	94	3	1480	26	14	22	37	1.92
1459218--1459769	113	5.0	111	87	6	734	37	13	18	29	1.90
1459218--1459755	221	2.4	225	88	5	758	38	13	18	28	1.89
1460084--1460169	3	28.7	3	87	0	127	37	1	0	61	1.04
1460485--1460524	13	3.1	13	82	13	55	82	2	15	0	0.77
1463267--1463596	169	1.9	170	89	1	511	46	11	8	33	1.71
1464091--1464174	40	2.1	40	86	2	114	32	16	20	30	1.95
1464101--1464422	41	7.9	41	88	2	389	27	19	19	32	1.96
1467992--1468321	43	7.7	42	84	3	347	23	23	20	32	1.98
1468011--1468321	85	3.7	84	83	4	365	24	23	20	31	1.98
1471907--1471951	23	2.0	22	86	4	63	53	4	11	31	1.56
1473007--1473118	51	2.2	51	85	3	145	16	36	30	16	1.91
1473252--1473293	10	4.2	10	85	11	59	30	28	0	40	1.57
1473417--1473637	110	2.0	111	92	0	372	36	8	9	46	1.66
1476234--1476349	51	2.4	46	81	9	135	28	21	22	27	1.99
1479645--1479693	23	2.1	23	92	0	80	34	4	26	34	1.76
1480903--1480975	32	2.3	32	97	0	137	21	5	28	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1480903--1480985	32	2.6	32	92	3	123	20	7	31	40	1.79
1484752--1484811	28	2.1	27	82	11	68	50	0	5	45	1.23

Tables:   1   2   3   4   5   6   7   8

The End!