genome.fa.s7987.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007987.1 Hibiscus syriacus cultivar Beakdansim tig00110432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  872063

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 573 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318318--318437	47	2.6	47	93	1	197	23	21	23	31	1.98
318318--318442	23	5.3	23	78	2	124	24	20	23	32	1.98
323138--323186	22	2.2	22	78	7	55	32	28	28	10	1.90
323985--324020	18	2.0	18	100	0	72	11	22	33	33	1.89
323882--324245	121	3.0	121	97	0	692	25	15	24	34	1.94
324243--324362	47	2.6	47	91	1	197	22	22	23	31	1.98
324243--324367	23	5.3	23	77	2	124	23	21	23	32	1.98
326187--326253	20	3.3	20	75	8	82	26	19	23	29	1.98
326166--326275	40	2.7	39	75	12	114	28	15	23	32	1.95
327227--327384	83	1.9	83	90	0	253	27	21	13	37	1.91
327243--327450	83	2.5	83	84	0	245	28	19	13	38	1.90
328025--328421	184	2.2	184	89	4	624	44	3	8	44	1.49
332681--332722	21	2.0	21	85	0	57	50	0	0	50	1.00
332730--332788	25	2.3	25	80	11	66	59	1	0	38	1.08
334789--334923	21	6.6	21	70	6	71	36	25	17	20	1.95
334894--334985	20	4.6	21	82	8	120	43	23	18	14	1.87
334932--335162	20	11.6	20	80	5	216	36	25	17	19	1.94
334894--335162	40	6.7	39	87	5	231	37	25	17	18	1.93
335852--335898	24	2.0	24	87	8	69	25	14	21	38	1.92
336072--336096	12	2.1	12	100	0	50	72	0	28	0	0.86
338238--338404	54	3.1	54	98	0	316	29	16	14	40	1.87
338480--338690	33	6.2	33	80	16	206	45	18	21	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338480--338708	85	2.7	89	89	6	341	45	18	21	13	1.84
338617--338671	14	3.6	14	73	21	56	45	20	23	10	1.82
338494--338714	52	4.2	52	86	5	272	45	18	21	14	1.85
338494--338714	19	12.7	19	75	18	221	45	18	21	14	1.85
338685--338799	52	2.2	52	90	0	176	19	22	18	40	1.92
338704--338808	52	2.0	52	96	0	192	14	22	18	44	1.85
338723--338800	19	4.4	19	81	15	112	14	21	17	46	1.84
338907--338943	14	2.6	14	91	0	65	45	21	0	32	1.52
340881--341037	19	8.8	19	77	13	154	47	22	19	10	1.80
340959--341015	14	3.7	14	77	20	60	45	22	21	10	1.82
340940--341032	33	2.8	33	95	0	168	47	21	20	10	1.80
340881--341037	52	2.9	54	79	15	166	47	22	19	10	1.80
341033--341147	19	6.3	19	83	10	141	8	14	27	48	1.73
341192--341473	93	3.1	93	98	1	541	45	19	12	22	1.83
343173--343269	20	5.2	20	72	18	100	46	17	24	11	1.81
343171--343235	21	3.1	21	82	4	96	47	15	26	10	1.78
343220--343276	14	3.7	14	75	20	60	43	22	24	8	1.81
343171--343293	33	3.5	33	90	8	165	46	18	24	10	1.81
343294--343412	21	6.3	19	77	13	95	10	22	21	45	1.82
343336--343413	41	1.9	41	97	0	147	12	25	16	44	1.83
343337--343412	21	3.7	21	83	3	109	11	25	17	46	1.82
343492--343562	33	2.2	33	94	0	124	47	16	23	11	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343942--344134	20	9.6	20	77	7	158	17	18	26	38	1.92
343941--344134	40	4.8	40	83	3	210	17	18	26	38	1.92
349239--349284	12	3.9	11	86	11	56	45	4	17	32	1.68
352031--352298	123	2.2	122	86	2	367	32	18	16	32	1.93
353113--353176	21	3.4	21	66	28	61	29	4	18	46	1.69
353105--353213	35	3.0	36	90	5	175	30	5	18	45	1.72
353634--353666	16	2.1	16	94	0	57	33	6	27	33	1.81
357700--357792	35	2.7	35	96	1	170	36	9	16	37	1.81
357770--357833	21	3.4	21	66	28	61	29	4	18	46	1.69
357727--357881	35	4.3	36	87	6	192	32	6	18	42	1.75
360082--360145	30	2.1	30	85	0	83	20	17	26	35	1.94
363422--363582	65	2.5	65	82	5	184	32	18	21	26	1.97
367312--367402	43	2.1	43	85	0	119	40	16	21	20	1.91
368579--368634	2	28.0	2	100	0	112	50	0	0	50	1.00
372900--373020	41	2.9	41	81	2	116	32	19	19	29	1.96
372920--373079	41	4.0	42	77	10	140	32	22	16	28	1.95
376938--377083	43	3.4	43	83	0	186	24	22	19	33	1.97
382534--382608	8	8.9	8	71	7	51	12	5	5	77	1.10
382536--382660	37	3.4	36	68	20	98	16	3	6	74	1.15
383902--383946	23	2.0	23	86	0	63	17	15	13	53	1.73
389288--389344	28	2.0	28	82	3	69	43	8	19	28	1.80
389889--389998	50	2.3	48	76	9	118	50	14	9	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396514--396606	29	2.9	31	73	18	84	44	0	8	47	1.34
396566--396620	18	3.4	18	65	31	52	38	0	9	52	1.33
396882--396959	30	2.6	29	84	15	97	43	2	8	44	1.49
396903--396983	22	3.3	22	71	23	72	44	1	12	41	1.50
399303--399351	25	2.0	25	95	0	89	46	14	0	38	1.44
399304--399352	14	3.7	14	76	15	59	48	14	0	36	1.44
399382--399547	39	4.2	38	65	18	106	45	12	0	42	1.46
399372--399625	60	4.2	60	95	0	456	45	12	0	41	1.45
399481--399625	21	7.2	21	65	20	67	45	13	0	41	1.43
399688--399736	14	3.7	14	76	15	50	46	12	0	40	1.41
399688--399736	25	2.0	25	87	0	71	46	12	0	40	1.41
399704--400126	60	7.1	60	92	1	719	45	11	0	42	1.42
399704--400632	178	5.5	173	80	12	941	45	12	1	41	1.50
400009--400102	21	4.6	21	64	23	65	47	9	0	42	1.36
399953--400594	156	4.0	154	70	19	458	45	11	1	41	1.51
400261--400308	14	3.6	14	81	16	66	47	16	0	35	1.47
400280--400550	48	5.4	48	84	11	353	47	11	0	40	1.43
400329--400453	60	2.1	59	91	5	200	46	12	0	40	1.48
400260--400364	14	7.2	14	69	17	54	48	12	0	39	1.41
400534--400621	21	4.3	21	64	18	51	45	13	1	39	1.51
400485--400632	60	2.5	60	93	1	253	45	14	0	39	1.49
400604--400688	14	6.4	14	84	5	97	42	8	2	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400632--400695	12	5.2	12	85	9	85	42	3	4	50	1.39
400629--400710	23	3.4	24	80	9	87	40	2	4	52	1.36
401364--401482	26	4.6	26	91	4	195	42	7	3	46	1.48
401504--401541	12	3.2	12	92	3	60	39	7	2	50	1.46
401727--401768	20	2.1	20	91	8	68	35	4	2	57	1.33
404795--404853	26	2.3	25	77	8	64	44	1	6	47	1.39
406095--406220	65	1.9	65	91	3	209	26	17	30	25	1.97
406295--406347	16	3.1	16	91	8	79	20	47	13	18	1.82
406307--406362	19	2.8	20	94	5	105	19	46	14	19	1.84
406298--406362	19	3.5	19	91	8	100	18	47	13	20	1.82
406401--406481	28	2.8	29	92	3	137	9	23	37	29	1.87
408856--408948	21	4.5	21	78	4	100	39	18	24	17	1.91
408856--408948	41	2.3	41	100	0	186	39	18	24	17	1.91
408875--409009	41	3.3	41	84	6	150	37	21	22	18	1.94
408937--409010	20	3.7	20	78	3	76	35	24	18	21	1.96
409529--409576	19	2.5	19	77	12	53	45	27	16	10	1.80
409577--409755	19	9.8	19	73	15	119	12	20	21	45	1.83
409577--409757	33	4.9	38	77	12	139	12	20	21	45	1.84
409644--409731	33	2.6	33	92	1	140	11	23	25	39	1.88
409670--409747	20	4.3	19	75	20	76	14	23	23	39	1.90
411808--411874	21	3.2	21	65	21	50	23	34	20	20	1.97
411752--411874	42	2.9	41	80	7	113	22	35	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413232--413267	14	2.6	14	95	0	63	30	0	25	44	1.54
413446--413596	19	8.7	19	63	21	71	15	22	19	41	1.90
413450--413576	33	3.9	32	85	8	184	15	22	18	42	1.89
413443--413573	66	2.0	66	96	0	244	16	22	18	41	1.89
415867--415891	12	2.1	12	100	0	50	0	28	0	72	0.86
416066--416119	24	2.2	24	90	0	81	38	20	16	24	1.92
417179--417227	20	2.5	20	93	3	82	36	26	18	18	1.94
417262--417331	19	4.2	16	83	16	58	12	21	18	47	1.82
417273--417321	19	2.6	19	100	0	98	14	20	16	48	1.80
419321--419438	20	6.4	19	74	13	86	41	23	20	14	1.89

Tables:   1   2   3   4   5