genome.fa.s7987.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007987.1 Hibiscus syriacus cultivar Beakdansim tig00110432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  872063

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 573 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607193--607446	53	4.8	53	90	1	375	22	25	21	30	1.98
607922--607992	22	3.3	21	69	15	65	35	21	18	25	1.95
607874--608002	42	3.1	41	86	3	170	33	21	18	26	1.97
608005--608417	80	5.2	80	89	2	623	29	18	17	34	1.94
608005--608417	159	2.6	160	91	2	652	29	18	17	34	1.94
608376--608472	42	2.3	42	89	0	149	30	24	20	23	1.98
608400--608474	20	3.7	20	69	13	62	30	25	22	21	1.99
612221--612288	34	2.0	34	100	0	136	23	23	20	32	1.98
614516--614564	8	6.1	8	88	9	73	81	0	0	18	0.69
614518--614564	23	2.0	24	91	4	78	82	0	0	17	0.66
619079--619111	3	11.0	3	100	0	66	33	0	0	66	0.92
619988--620041	21	2.6	19	80	13	54	59	1	1	37	1.19
620010--620051	19	2.2	19	86	4	57	54	0	0	45	0.99
620009--620057	24	2.0	24	84	7	64	55	2	0	42	1.11
625801--625960	80	2.0	80	91	2	259	35	22	5	36	1.78
626721--626800	21	3.8	21	69	12	56	33	23	18	23	1.97
626829--627039	20	10.4	20	76	6	174	37	23	17	21	1.93
626844--627039	40	4.8	41	89	1	279	38	23	16	20	1.93
626829--627020	60	3.1	61	78	9	194	38	23	17	20	1.93
627600--627678	20	3.9	21	85	5	85	51	16	18	12	1.75
627685--627775	33	2.8	33	86	0	110	14	20	23	41	1.89
629006--629040	16	2.2	16	89	0	52	17	14	5	62	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629119--629167	2	24.5	2	91	0	80	44	0	2	53	1.12
629125--629173	16	3.1	16	93	0	80	40	0	4	55	1.19
629219--629258	18	2.2	19	90	4	64	30	7	0	62	1.23
630805--630931	50	2.6	47	84	9	159	25	10	29	33	1.89
633472--633550	26	3.3	25	68	21	78	24	21	10	44	1.83
633479--633550	20	3.3	20	68	20	63	23	22	11	43	1.85
635367--635414	14	3.6	13	88	5	62	50	27	0	22	1.50
635383--635413	10	3.1	10	95	0	53	51	25	0	22	1.48
635957--636074	36	3.3	36	84	8	159	35	16	11	36	1.85
635957--636091	36	3.8	35	84	6	155	34	19	12	34	1.89
635957--636091	71	1.9	72	84	1	182	34	19	12	34	1.89
635998--636316	167	1.9	166	85	7	441	33	17	11	37	1.86
636177--636258	36	2.3	36	78	4	94	36	19	12	31	1.89
636232--636469	105	2.3	101	83	8	286	30	20	11	37	1.88
636415--636534	36	3.4	36	79	6	113	30	20	12	35	1.90
636065--636695	272	2.3	267	84	6	799	31	17	11	38	1.86
636847--636943	29	3.5	29	84	6	130	26	11	15	46	1.80
636833--636955	29	4.4	28	82	9	128	26	10	15	47	1.77
636895--636956	26	2.3	27	83	10	74	30	6	12	50	1.66
636952--637054	52	2.0	53	94	1	181	32	13	18	35	1.90
637042--637105	30	2.1	30	91	0	101	35	9	15	39	1.80
637925--638012	28	3.1	28	83	6	99	28	12	14	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638041--638352	46	7.1	45	72	14	206	25	29	17	26	1.98
638031--638503	130	3.6	130	85	3	619	25	29	19	25	1.98
638426--638594	91	1.8	93	91	2	279	24	26	24	24	2.00
640232--640276	2	22.5	2	88	0	54	40	0	4	55	1.20
640228--640278	16	3.2	16	85	0	75	35	0	3	60	1.15
640327--640366	18	2.2	19	90	4	64	30	7	0	62	1.23
642155--642181	13	2.1	13	100	0	54	14	22	22	40	1.90
642781--643152	90	4.1	93	87	5	510	23	11	18	46	1.81
642781--643152	184	2.0	183	86	5	520	23	11	18	46	1.81
643255--643312	14	3.8	14	75	20	62	46	20	24	8	1.78
643240--643364	33	3.8	33	88	2	155	46	24	20	8	1.79
643303--643380	19	4.4	19	79	15	94	46	28	15	10	1.78
643412--643512	20	5.3	20	82	11	124	20	19	21	37	1.94
643980--644021	21	2.2	19	87	12	59	21	35	19	23	1.96
645632--646048	20	20.8	20	75	9	197	23	18	23	34	1.96
645774--645818	21	2.1	21	87	0	63	37	17	26	17	1.93
645869--646098	40	5.8	40	86	3	288	19	19	24	36	1.95
645871--646098	60	3.8	60	78	9	234	19	19	24	36	1.95
646105--646200	42	2.3	42	76	5	97	22	19	22	34	1.97
646189--646242	20	2.7	19	75	8	63	16	18	31	33	1.93
650230--650272	13	3.2	14	77	12	54	48	0	2	48	1.14
650787--650812	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652914--652948	8	4.6	8	86	13	56	88	11	0	0	0.51
652911--652953	14	3.1	14	96	3	79	88	11	0	0	0.52
652911--652960	19	2.6	20	87	12	70	88	12	0	0	0.53
661068--661130	32	1.9	34	83	6	85	23	31	7	36	1.84
661843--661908	23	2.8	24	75	11	66	50	13	12	24	1.76
669203--669241	14	2.6	14	84	8	51	61	0	2	35	1.10
669307--669371	2	32.0	2	93	3	112	47	1	1	49	1.20
671709--671738	12	2.5	12	100	0	60	60	0	0	40	0.97
673197--673224	12	2.3	12	100	0	56	82	0	0	17	0.68
673209--673256	18	2.6	19	80	12	55	70	4	6	18	1.25
673298--673764	36	13.2	38	78	13	328	44	7	4	43	1.52
673298--673764	73	6.6	73	75	16	328	44	7	4	43	1.52
673298--673764	110	4.4	107	77	15	404	44	7	4	43	1.52
673580--673640	12	5.1	12	72	7	61	44	8	6	40	1.60
678790--678820	4	7.8	4	100	0	62	25	0	0	74	0.82
679036--679080	24	1.9	24	90	4	74	44	2	0	53	1.13
680452--680504	7	7.7	7	95	2	81	15	37	15	32	1.88
688035--688102	25	2.8	25	76	14	70	48	1	1	48	1.19
688382--688435	19	2.8	19	91	0	81	31	25	20	22	1.98
688486--688535	21	2.4	21	80	6	66	22	26	18	34	1.96
688510--688760	41	6.1	41	73	8	111	33	19	19	27	1.96
688525--688617	21	4.5	21	78	9	102	36	18	22	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688565--688635	20	3.5	20	77	11	90	32	22	21	23	1.98
688627--688699	21	3.5	21	75	3	67	23	20	17	38	1.93
688689--688800	20	5.6	20	80	4	118	39	19	19	21	1.93
688683--688782	41	2.5	41	82	8	123	42	18	19	21	1.90
689352--689412	14	4.0	14	73	19	50	44	22	22	9	1.82
689325--689393	19	3.8	19	66	26	60	44	21	21	11	1.84
689331--689423	33	2.8	32	87	8	123	44	24	20	10	1.83
693037--693070	14	2.4	14	95	0	59	32	0	23	44	1.54
693179--693225	19	2.5	19	96	0	85	44	21	21	12	1.85
693250--693400	19	8.7	19	65	21	89	13	21	19	45	1.85
693254--693380	33	3.8	33	94	0	209	12	22	18	46	1.83
693275--693362	14	5.6	14	72	23	59	12	22	19	45	1.84
693354--693446	20	4.7	20	68	13	66	22	17	23	36	1.94
695708--695732	12	2.1	12	100	0	50	0	28	0	72	0.86
695907--695974	24	2.8	24	84	0	82	38	19	16	26	1.92
696690--696777	20	4.4	20	91	0	113	26	18	28	27	1.98
696790--696838	21	2.4	21	86	3	64	40	16	22	20	1.91
696806--696899	41	2.3	42	81	5	120	35	23	20	21	1.96
696827--696936	20	5.4	20	83	6	114	29	27	19	24	1.98
696824--696936	41	2.8	42	83	4	133	30	26	18	23	1.98
696869--696945	20	3.8	20	92	0	127	23	27	20	28	1.99
696909--696954	20	2.3	20	84	0	56	30	26	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696823--696954	40	3.3	40	81	1	156	32	25	18	23	1.97
697152--697217	34	2.0	33	87	3	96	39	22	24	13	1.90
698853--698947	42	2.2	42	84	3	127	21	13	43	22	1.87
698883--698943	21	2.9	21	73	9	70	21	13	42	22	1.87
699290--699362	20	3.7	20	88	0	92	34	21	26	17	1.96
699329--699374	19	2.3	20	85	3	58	39	19	23	17	1.92
699402--699498	19	5.6	19	68	22	79	12	20	20	46	1.83
699424--699482	14	3.9	14	74	20	55	8	18	23	49	1.75
699410--699498	33	2.7	33	96	0	160	11	20	21	47	1.81
701395--701437	20	2.2	20	91	0	68	51	20	18	9	1.74

Tables:   1   2   3   4   5