genome.fa.s7987.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007987.1 Hibiscus syriacus cultivar Beakdansim tig00110432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  872063

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 573 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419395--419452	14	3.9	14	77	16	62	48	24	17	10	1.78
419379--419457	32	2.4	33	93	2	133	46	22	18	11	1.81
419486--419543	14	3.9	14	79	16	71	10	17	24	48	1.78
419469--419559	32	2.8	33	94	3	166	12	18	21	47	1.81
419544--419598	20	2.8	19	83	8	65	16	23	23	36	1.94
420071--420114	18	2.5	18	85	3	63	13	15	43	27	1.85
421433--421470	20	1.9	20	88	0	58	50	21	15	13	1.78
421968--422020	20	2.7	20	93	0	88	24	18	28	28	1.98
421988--422065	41	1.9	41	83	0	102	21	15	21	41	1.90
421948--422062	20	5.7	20	76	5	79	23	16	23	36	1.94
422051--422126	21	3.7	21	76	3	91	15	26	17	40	1.89
422070--422143	20	3.7	20	78	3	85	17	24	17	40	1.91
422051--422143	41	2.3	41	98	0	177	17	25	17	39	1.91
423036--423080	22	2.0	23	86	4	65	44	0	2	53	1.13
423036--423089	23	2.4	22	81	9	56	42	0	1	55	1.10
426559--426591	13	2.7	13	90	9	52	15	12	15	57	1.65
430791--430887	42	2.3	41	83	1	122	24	22	23	28	1.99
431006--431090	42	2.0	42	90	0	134	28	22	17	31	1.97
431146--431673	42	12.6	42	67	15	189	29	18	21	30	1.97
431029--431336	116	2.6	118	88	3	449	29	19	21	29	1.97
431146--431513	164	2.2	167	85	6	490	28	18	22	30	1.97
431295--431632	135	2.7	124	81	10	430	28	18	20	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432115--432261	53	2.8	53	85	0	195	33	19	25	22	1.97
432115--432285	53	3.2	52	80	11	179	31	19	25	23	1.98
434892--434930	16	2.4	16	86	0	51	41	5	5	48	1.47
435740--435769	2	15.0	2	100	0	60	50	0	0	50	1.00
438940--439329	185	2.1	185	90	2	615	42	3	8	46	1.49
443323--443567	42	5.9	42	74	15	190	27	19	20	32	1.97
443219--443449	82	2.8	80	77	14	208	32	16	17	33	1.93
446904--447009	43	2.5	43	84	3	135	28	25	16	29	1.97
447839--447890	9	6.1	9	76	13	56	36	0	0	63	0.95
447839--447887	17	2.9	17	87	6	73	38	0	0	61	0.96
447839--447888	16	3.1	16	91	2	73	38	0	0	62	0.96
450093--450151	27	2.2	27	81	0	64	15	1	11	71	1.23
450903--450940	18	2.1	18	85	9	51	31	0	0	68	0.90
451036--451070	18	1.9	18	88	0	52	28	2	2	65	1.21
451420--451486	31	2.2	31	94	0	116	17	28	25	28	1.98
454203--454294	20	4.6	20	87	1	103	38	19	19	22	1.94
454205--454294	40	2.2	40	88	0	126	37	20	18	23	1.94
454463--454505	22	2.0	22	95	0	77	16	48	16	18	1.81
454837--454882	20	2.3	20	88	0	65	50	19	10	19	1.77
454899--454949	20	2.5	20	96	0	93	7	19	21	50	1.72
456433--456530	42	2.3	42	82	0	124	29	35	16	18	1.93
456645--456694	21	2.4	21	86	0	73	20	14	30	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456711--456760	21	2.4	20	80	12	57	20	10	36	34	1.86
456711--456806	42	2.3	43	76	5	106	20	12	33	33	1.90
457102--457220	21	5.7	21	87	4	150	23	36	15	24	1.94
458602--458632	16	1.9	16	93	0	53	19	0	12	67	1.22
458726--458785	29	2.1	29	87	0	84	38	23	13	25	1.91
459023--459058	18	2.0	18	94	0	63	16	2	25	55	1.55
461321--461374	24	2.2	24	90	6	83	40	20	16	22	1.91
462111--462149	16	2.4	16	82	0	51	66	0	5	28	1.12
462157--462197	22	1.9	21	85	5	55	26	9	39	24	1.86
462297--462425	20	6.4	20	71	15	88	34	11	24	29	1.90
462298--462425	40	3.2	40	83	2	141	35	11	24	28	1.91
462317--462466	60	2.5	60	76	5	142	34	12	23	29	1.92
462298--462485	20	9.4	20	72	11	80	33	12	23	29	1.92
462398--462505	41	2.7	39	76	11	94	33	14	25	26	1.95
462478--462525	20	2.4	20	100	0	96	35	16	27	20	1.94
462531--462571	20	2.0	20	90	0	64	29	9	31	29	1.89
467790--467824	18	1.9	18	94	0	61	28	28	14	28	1.95
470239--470338	50	2.0	50	98	0	191	40	21	12	27	1.88
474766--474802	18	2.1	18	89	0	56	32	29	18	18	1.96
476366--476421	28	2.0	28	85	0	76	44	1	0	53	1.11
479917--479956	21	1.9	21	89	0	62	37	17	17	27	1.92
483037--483101	30	2.2	30	88	0	103	21	16	15	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488949--488984	16	2.2	16	90	9	56	58	8	0	33	1.28
489372--489417	21	2.1	21	88	4	65	54	2	8	34	1.43
490386--490425	21	1.9	21	89	0	62	52	5	7	35	1.51
490721--490746	2	13.0	2	100	0	52	50	0	0	50	1.00
492829--493006	90	2.0	89	85	3	241	27	9	23	39	1.86
495452--495477	3	8.7	3	100	0	52	0	0	30	69	0.89
534452--534496	9	5.0	9	88	0	72	15	55	17	11	1.68
550494--550536	20	2.1	21	87	12	63	51	0	4	44	1.22
557310--557341	7	4.6	7	96	0	55	15	15	15	53	1.74
557306--557341	14	2.6	14	90	0	63	19	13	13	52	1.74
559218--559259	2	21.0	2	100	0	84	50	0	0	50	1.00
565364--565559	98	2.0	98	100	0	392	38	10	13	37	1.78
572427--572464	20	1.9	20	94	0	67	31	18	23	26	1.97
573276--573327	23	2.3	23	100	0	104	34	7	21	36	1.82
573991--574051	23	2.7	23	81	0	86	19	24	27	27	1.99
581779--581830	18	2.9	18	91	0	86	21	21	40	17	1.91
581878--581916	10	4.0	10	80	6	53	17	23	41	17	1.91
582171--582213	20	2.2	20	86	0	59	32	20	13	32	1.92
589755--589852	41	2.4	41	83	6	135	39	22	16	21	1.92
589778--589852	21	3.7	20	71	10	62	38	22	17	21	1.93
589904--589940	17	2.2	17	95	0	65	62	24	0	13	1.31
589974--590017	22	2.0	22	95	0	79	20	40	15	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590241--590304	20	3.2	20	86	0	83	15	18	21	43	1.87
590441--590495	25	2.2	24	78	15	58	20	9	18	52	1.71
591625--591669	18	2.5	18	88	0	72	26	44	15	13	1.83
592139--592184	20	2.3	20	85	7	58	39	23	21	15	1.92
592158--592259	19	5.6	19	79	12	99	43	20	22	13	1.87
592271--592328	14	3.9	14	75	16	53	13	17	20	48	1.81
592276--592344	33	2.1	33	89	2	104	14	17	21	46	1.84
592329--592366	20	2.0	20	94	5	69	21	18	26	34	1.96
592336--592380	20	2.2	20	84	7	56	17	17	24	40	1.91
594252--594287	14	2.6	14	90	0	54	30	0	22	47	1.52
594401--594454	14	3.5	14	75	22	54	46	20	22	11	1.82
594414--594459	14	2.8	17	75	25	53	45	19	21	13	1.84
594485--594554	22	3.5	20	90	9	115	14	24	27	34	1.94
594478--594554	41	1.9	40	92	7	129	14	22	25	37	1.92
594769--594819	20	2.5	20	90	0	75	21	31	13	33	1.92
595564--595617	24	2.2	24	90	0	81	22	16	20	40	1.91
595792--595816	12	2.1	12	100	0	50	72	0	28	0	0.86
598108--598234	33	3.8	33	87	4	193	43	19	22	14	1.88
598109--598241	66	2.0	66	95	0	239	42	19	21	16	1.89
598238--598320	30	2.6	32	90	5	125	13	20	20	45	1.84
598429--598463	14	2.5	14	90	0	61	45	22	0	31	1.53
599822--599888	21	3.2	21	68	4	55	19	20	35	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599822--599944	42	2.9	41	79	7	113	22	18	36	21	1.95
600181--600333	78	1.9	79	88	5	227	43	17	13	25	1.85
602006--602146	19	7.8	19	70	17	95	43	19	23	12	1.85
602031--602116	33	2.6	33	94	1	145	38	22	26	12	1.90
602152--602188	19	1.9	19	88	0	56	0	16	27	56	1.40
602158--602210	19	2.7	19	85	2	61	7	18	24	49	1.74
602728--602780	20	2.7	20	93	0	88	26	20	28	24	1.99
602789--602842	20	2.7	20	97	0	99	25	18	24	31	1.97
602729--602845	61	1.9	61	85	0	162	23	17	24	33	1.97
602729--602863	61	2.2	61	81	2	155	22	20	24	32	1.98

Tables:   1   2   3   4   5