genome.fa.s7993.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007993.1 Hibiscus syriacus cultivar Beakdansim tig00110443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2245901

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  10  of  12  ( 1410 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1777400--1777516	53	2.2	53	98	1	227	13	23	17	44	1.85
1777419--1777516	19	5.4	19	84	13	143	14	22	17	45	1.84
1777623--1777659	14	2.6	14	86	0	56	45	18	0	35	1.50
1779581--1779753	19	9.6	19	79	12	168	46	23	19	10	1.81
1779675--1779731	14	3.7	14	77	20	60	45	22	21	10	1.82
1779656--1779748	33	2.8	33	95	0	168	47	21	20	10	1.80
1779749--1779863	19	6.3	19	82	10	141	8	16	28	46	1.77
1779911--1780472	93	6.1	93	99	0	1108	46	19	12	21	1.83
1782172--1782268	20	5.2	20	72	18	100	46	17	24	11	1.81
1782170--1782234	21	3.1	21	82	4	96	47	15	26	10	1.78
1782219--1782275	14	3.7	14	75	20	60	43	22	24	8	1.81
1782170--1782292	33	3.5	33	90	8	165	46	18	24	10	1.81
1782309--1782378	21	3.4	21	80	4	88	14	24	17	44	1.85
1782309--1782365	20	2.8	20	81	2	78	12	24	17	45	1.83
1782458--1782528	33	2.2	33	92	0	115	47	18	22	11	1.80
1782710--1782764	22	2.5	22	81	0	74	20	16	40	23	1.91
1782911--1783104	20	9.6	20	82	5	221	19	19	25	35	1.95
1782911--1783104	60	3.2	60	83	0	253	19	19	25	35	1.95
1783091--1783173	21	4.0	21	73	6	78	25	16	24	33	1.96
1783071--1783169	42	2.4	43	77	11	100	21	18	23	37	1.94
1783309--1783340	16	2.0	16	93	0	55	56	6	9	28	1.55
1783424--1783550	19	6.6	20	73	10	79	52	4	9	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1783498--1783571	22	3.5	22	87	7	91	51	4	5	39	1.44
1783367--1783553	3	61.3	3	66	13	69	54	4	8	32	1.52
1784529--1784562	16	2.1	16	100	0	68	23	32	17	26	1.97
1785453--1785493	21	2.0	21	85	0	55	39	0	7	53	1.29
1787097--1787178	17	4.8	17	82	5	78	35	13	8	42	1.75
1787492--1787547	26	2.2	26	96	0	103	33	26	12	26	1.92
1790959--1791012	17	3.2	17	78	0	63	38	12	5	42	1.67
1794774--1794853	7	12.0	7	70	21	57	0	32	0	67	0.91
1794780--1794839	20	3.0	20	95	2	102	0	31	0	68	0.90
1794776--1794855	20	4.0	20	84	9	101	0	32	0	67	0.91
1794779--1794855	27	2.9	27	79	14	79	0	32	0	67	0.91
1794887--1794930	2	22.0	2	100	0	88	50	0	0	50	1.00
1796024--1796071	20	2.4	20	100	0	96	18	22	20	37	1.94
1802503--1802550	3	15.7	3	79	12	53	66	2	0	31	1.03
1802758--1803061	133	2.3	133	84	4	398	23	19	33	24	1.97
1803243--1803464	64	3.5	64	76	12	204	40	12	17	30	1.86
1803432--1803518	29	3.0	29	93	1	138	41	14	13	29	1.85
1803701--1803822	34	3.4	35	75	6	111	40	12	18	29	1.87
1803925--1803996	32	2.2	32	85	9	94	31	20	16	30	1.95
1807610--1807986	198	1.9	198	87	1	549	25	22	19	32	1.97
1811666--1811710	3	15.7	3	86	9	67	68	2	0	28	1.01
1811657--1811714	9	6.4	10	82	13	56	67	1	0	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812880--1812948	36	1.9	36	90	0	111	23	24	5	46	1.74
1814899--1814939	5	8.0	5	86	5	55	43	2	0	53	1.13
1814899--1814954	26	2.1	27	86	3	78	46	1	1	50	1.22
1815596--1815970	81	4.6	82	81	7	429	18	33	13	34	1.89
1815590--1815970	168	2.3	167	82	3	459	17	33	12	35	1.88
1828174--1828296	61	2.0	61	93	0	210	40	17	12	30	1.85
1829576--1829623	25	1.9	25	87	8	71	52	6	0	41	1.27
1830447--1830477	16	1.9	16	93	0	53	51	6	0	41	1.27
1830471--1830500	5	6.2	5	92	7	53	43	0	0	56	0.99
1830447--1830502	19	3.1	19	76	19	50	50	3	0	46	1.19
1835299--1835392	29	3.2	29	64	16	75	36	24	3	36	1.72
1835268--1835485	60	3.6	60	86	3	262	32	21	5	39	1.78
1836980--1837058	3	26.3	3	100	0	158	32	0	0	67	0.91
1837364--1837394	15	2.1	15	94	5	55	64	0	3	32	1.09
1838528--1838704	3	55.7	3	76	15	87	63	1	4	29	1.24
1838722--1838766	2	22.5	2	100	0	90	51	0	0	48	1.00
1838774--1839868	548	2.0	544	96	0	2019	39	14	17	28	1.89
1841201--1841424	120	1.9	120	92	3	380	24	18	24	33	1.97
1841396--1841534	55	2.5	55	84	9	165	25	15	22	36	1.94
1842297--1842334	19	2.0	19	85	10	51	13	10	0	76	1.02
1852699--1852784	17	4.9	16	73	17	73	72	2	5	19	1.17
1852686--1852784	35	2.8	35	77	10	96	71	3	7	18	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852698--1852788	8	10.5	8	70	13	56	73	2	5	18	1.13
1852690--1852788	27	3.8	25	78	12	101	72	3	6	18	1.18
1859522--1859554	3	11.0	3	100	0	66	66	0	0	33	0.92
1867167--1867220	24	2.2	24	100	0	108	31	7	20	40	1.80
1867749--1867805	20	2.8	20	97	0	105	38	15	19	26	1.92
1871989--1872060	28	2.6	28	90	0	117	18	41	12	27	1.86
1873015--1873048	14	2.4	14	90	0	50	29	17	0	52	1.45
1873056--1873082	14	1.9	14	100	0	54	7	7	0	85	0.75
1873277--1873312	18	2.1	17	94	5	63	30	2	0	66	1.06
1873432--1873499	2	34.0	2	100	0	136	50	0	0	50	1.00
1878765--1878803	19	2.1	18	90	4	60	20	10	15	53	1.70
1883012--1883164	37	4.1	37	83	6	184	39	20	18	20	1.92
1883025--1883215	73	2.6	72	80	4	215	39	22	18	19	1.93
1883025--1883206	36	5.0	36	77	8	156	39	23	18	19	1.93
1883207--1884395	214	5.5	214	90	1	1772	32	15	20	32	1.93
1884423--1884568	37	3.9	36	83	5	184	41	19	15	23	1.90
1884423--1884568	74	2.0	74	86	2	204	41	19	15	23	1.90
1884750--1884796	3	15.7	3	89	8	60	40	0	0	59	0.97
1884766--1884803	20	1.9	20	88	0	58	44	2	0	52	1.14
1884748--1884796	17	2.8	17	84	6	62	42	0	0	57	0.99
1887045--1887092	2	24.0	2	100	0	96	50	0	0	50	1.00
1888275--1888309	13	2.8	12	87	8	52	14	2	0	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1888274--1888312	21	1.9	21	89	5	62	15	2	0	82	0.79
1890605--1890658	11	4.9	11	88	6	83	87	0	12	0	0.56
1890605--1890658	21	2.5	22	90	6	83	87	0	12	0	0.56
1890605--1890649	10	4.3	10	94	5	72	88	0	11	0	0.50
1891781--1891918	54	2.6	54	89	0	204	36	12	24	26	1.91
1892923--1893249	73	4.5	73	91	0	501	31	14	12	41	1.83
1893260--1893601	123	2.8	123	90	1	546	37	16	20	25	1.93
1894836--1894878	15	2.9	15	79	3	52	16	9	0	74	1.06
1895084--1895113	11	2.6	11	94	5	51	16	3	0	80	0.85
1895241--1895266	2	13.0	2	100	0	52	50	0	0	50	1.00
1895888--1895927	21	1.9	21	94	0	71	32	30	15	22	1.94
1895893--1896050	20	7.8	20	79	9	135	39	22	15	22	1.91
1897829--1897925	42	2.3	42	89	0	140	22	19	35	22	1.96
1897829--1897930	21	4.9	21	81	0	114	23	19	35	21	1.96
1898429--1898479	21	2.4	21	100	0	102	29	23	11	35	1.90
1899373--1899428	19	2.9	18	84	10	67	55	16	12	16	1.70
1899828--1899878	22	2.3	22	86	0	66	17	19	43	19	1.89
1899982--1900019	20	2.0	20	84	5	51	44	13	15	26	1.83
1900026--1900067	20	2.1	20	90	0	66	19	11	21	47	1.81
1900069--1900154	20	4.3	20	83	2	93	23	17	17	41	1.89
1900069--1900154	40	2.2	40	85	4	111	23	17	17	41	1.89
1900320--1900357	19	2.0	19	100	0	76	42	21	5	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907953--1908012	31	1.9	31	82	0	75	10	6	45	38	1.64
1908267--1908291	12	2.1	12	100	0	50	40	8	36	16	1.77
1908320--1908375	29	1.9	29	96	0	103	10	37	30	21	1.87
1908357--1908399	22	2.0	22	90	0	68	20	44	20	13	1.86
1908449--1908537	34	2.5	35	87	5	117	10	26	35	26	1.88
1908506--1908533	14	2.0	14	100	0	56	7	28	42	21	1.79
1908486--1908519	10	3.4	10	84	15	52	8	29	38	23	1.85
1922875--1922926	20	2.6	21	93	6	83	15	23	0	61	1.33
1923648--1923707	3	20.3	3	80	10	70	58	0	1	40	1.08
1923664--1923723	14	4.6	12	75	20	50	53	0	1	45	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12