genome.fa.s7993.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007993.1 Hibiscus syriacus cultivar Beakdansim tig00110443_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2245901

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1410 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703665--703746	41	2.0	41	95	0	146	40	18	17	24	1.91
703823--703892	18	4.0	17	81	3	86	42	11	7	38	1.68
703823--703891	35	2.0	35	85	5	95	42	11	7	39	1.69
710456--710511	5	11.2	5	100	0	112	19	41	39	0	1.52
716479--716520	22	1.9	22	85	0	57	30	9	19	40	1.83
718508--718630	31	4.0	31	91	2	194	39	21	18	20	1.93
722611--722733	31	4.0	31	91	2	194	38	22	19	19	1.94
726149--726210	25	2.5	25	79	10	65	72	3	8	16	1.21
726134--726201	25	2.7	24	77	8	64	76	2	7	13	1.11
727259--727527	36	7.4	34	75	15	152	41	7	3	46	1.50
727307--727529	37	6.1	37	82	9	246	43	8	4	44	1.52
727385--727555	76	2.3	76	87	5	240	43	8	5	42	1.58
737226--737267	11	3.7	11	81	6	57	71	7	4	16	1.26
737222--737271	23	2.2	23	96	0	91	68	10	8	14	1.40
756441--756598	78	2.0	78	97	0	298	29	17	18	34	1.94
758419--758494	32	2.4	32	86	2	100	27	28	25	18	1.98
792644--792678	15	2.4	15	90	4	54	71	0	14	14	1.15
801952--801988	19	1.9	19	88	0	56	5	2	8	83	0.88
806992--807025	2	17.0	2	100	0	68	50	0	0	50	1.00
807025--807113	2	44.5	2	100	0	178	0	0	49	50	1.00
809639--809706	31	2.2	31	82	10	86	57	4	4	33	1.39
810284--810393	32	3.5	31	77	8	105	30	25	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811481--811553	26	2.7	26	85	4	83	20	8	21	49	1.75
815985--816017	15	2.1	17	88	11	52	36	0	24	39	1.56
816098--816797	117	5.8	117	87	4	723	23	22	21	32	1.98
816449--816797	127	2.8	126	92	1	574	21	22	22	33	1.97
816931--817029	23	4.6	23	66	19	70	44	1	19	35	1.57
816925--817051	62	2.0	63	93	1	220	39	0	22	37	1.60
817066--817205	57	2.5	57	84	2	183	34	9	23	32	1.87
819738--819770	3	11.3	3	93	6	59	69	0	0	30	0.88
823550--823583	2	17.0	2	100	0	68	50	0	0	50	1.00
823722--823791	2	35.5	2	79	2	79	41	1	7	50	1.39
833454--833838	45	8.7	45	76	9	199	23	16	20	39	1.92
833603--833995	45	8.8	45	77	9	256	22	16	21	39	1.92
833454--833995	89	6.1	89	75	8	286	23	16	19	40	1.91
833732--833979	134	1.9	134	86	1	363	25	14	21	39	1.91
833969--834025	30	1.9	30	96	0	105	22	15	12	49	1.78
833920--834070	74	2.0	75	94	1	268	23	17	17	41	1.90
833994--834113	45	2.7	45	88	0	168	25	16	17	40	1.90
834279--834405	43	2.9	45	77	10	122	25	16	16	40	1.89
834279--834530	45	5.7	45	76	11	164	23	17	18	40	1.91
834541--834941	45	9.0	45	84	2	520	24	16	19	38	1.92
834568--834947	134	2.8	135	83	3	514	24	16	19	39	1.92
834541--834941	179	2.2	179	85	2	529	24	16	19	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836207--836231	10	2.5	10	100	0	50	48	8	0	44	1.32
840362--840419	27	2.1	27	81	12	66	31	3	15	50	1.61
840414--840450	15	2.5	15	90	0	56	40	0	0	59	0.97
840892--840952	28	2.2	28	84	0	77	60	11	0	27	1.31
846920--846959	3	12.7	3	89	10	62	65	0	0	35	0.93
847243--847466	114	1.9	115	82	3	281	32	15	21	31	1.94
847359--847780	131	3.2	129	82	5	429	31	16	20	31	1.95
848896--848937	17	2.5	17	92	0	66	52	9	14	23	1.71
848912--849165	45	5.7	45	83	2	278	42	16	14	26	1.87
848912--849158	89	2.8	89	81	3	264	42	15	15	26	1.87
849198--849326	37	3.5	36	75	5	116	48	13	13	24	1.78
855960--856045	24	3.6	24	90	0	127	37	17	13	31	1.89
858490--858566	13	5.4	13	75	17	64	20	20	41	16	1.90
858513--858547	18	1.9	18	88	0	52	17	20	42	20	1.89
858494--858570	31	2.6	31	80	19	101	20	20	41	16	1.90
867591--867630	3	13.7	3	84	5	55	62	2	2	32	1.22
867596--867633	17	2.2	17	90	0	58	63	2	2	31	1.22
867593--867630	20	1.9	20	94	0	67	63	2	2	31	1.22
873145--873217	27	2.6	29	91	4	114	38	8	4	49	1.52
879587--879616	6	5.0	6	100	0	60	50	0	0	50	1.00
880606--880661	19	3.0	18	81	5	67	33	19	28	17	1.95
882576--882625	3	16.3	3	95	4	91	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882932--882963	13	2.4	13	94	5	55	71	12	15	0	1.14
882932--882963	7	4.7	7	92	7	57	71	12	15	0	1.14
887579--887628	20	2.5	20	80	3	57	32	14	32	22	1.93
887841--887880	21	1.9	21	94	0	71	50	7	10	32	1.64
890105--890193	20	4.8	19	78	13	105	24	22	30	22	1.99
890104--890172	35	2.0	34	88	2	102	26	23	28	21	1.99
890416--890455	21	1.9	21	89	0	62	50	10	10	30	1.69
892894--892935	20	2.0	21	90	4	68	26	23	35	14	1.93
892955--893008	19	2.9	18	91	5	81	24	18	31	25	1.97
894484--894557	24	3.1	24	84	0	85	40	20	16	22	1.91
898127--898172	24	1.9	24	95	0	83	28	13	17	41	1.86
905634--905679	24	1.9	24	100	0	92	30	13	15	41	1.85
908201--908266	33	2.0	33	88	11	100	36	10	13	39	1.80
914364--914419	22	2.5	23	77	8	62	35	23	23	17	1.95
914399--914457	19	3.2	18	80	7	73	32	20	30	16	1.95
916368--916454	3	29.3	3	97	2	167	33	0	0	66	0.92
920201--920350	29	5.6	27	84	11	193	54	0	8	37	1.35
921629--921674	2	23.0	2	100	0	92	50	0	0	50	1.00
921874--921912	20	2.0	20	89	0	60	28	28	10	33	1.90
923014--923077	22	2.9	22	80	2	83	37	23	23	15	1.93
924286--924342	3	19.0	3	85	0	78	0	40	0	59	0.97
924286--924344	12	4.9	12	100	0	118	0	42	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
927387--927428	2	21.0	2	90	0	66	45	0	0	54	0.99
927832--927859	6	4.7	6	100	0	56	46	0	0	53	1.00
928520--928583	33	1.9	33	87	6	94	34	10	15	39	1.83
929755--929812	23	2.6	23	88	2	82	58	13	12	15	1.63
929955--929984	15	2.0	15	93	0	51	40	23	13	23	1.90
930462--930505	22	2.0	23	82	13	56	70	0	6	22	1.11
931631--931718	16	5.5	16	100	0	176	37	18	6	37	1.77
931631--931735	32	3.3	32	94	1	176	37	20	6	36	1.79
931617--931735	48	2.5	48	87	4	177	37	21	5	34	1.78
931859--931972	53	2.2	53	100	0	228	31	18	10	39	1.85
932577--932695	26	4.6	26	86	7	170	52	0	10	36	1.35
932577--932695	53	2.3	51	89	5	177	52	0	10	36	1.35
943231--943290	3	19.7	3	80	13	61	38	0	0	61	0.96
944396--944462	2	33.5	2	100	0	134	49	0	0	50	1.00
944902--944951	22	2.4	21	83	9	66	46	0	0	54	1.00
944912--944953	22	2.0	21	95	4	75	42	0	0	57	0.99
944853--945152	148	2.0	148	78	7	306	40	5	7	47	1.53
950488--950699	65	3.3	65	80	11	222	30	24	18	26	1.98
950669--950717	19	2.6	19	84	9	57	24	28	20	26	1.99
958714--958805	45	2.0	45	88	12	136	73	0	13	13	1.09
958690--958818	52	2.5	51	82	8	163	74	0	14	10	1.07
958705--958803	7	13.7	7	82	16	114	72	0	14	13	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958718--958811	22	4.3	21	77	16	86	74	0	13	11	1.07
960176--960838	55	12.1	54	84	6	735	28	16	24	29	1.97
961984--962017	14	2.4	14	100	0	68	44	0	50	5	1.26
963472--963515	21	2.1	21	91	4	72	36	0	0	63	0.95
963471--963518	20	2.2	21	82	14	62	37	0	0	62	0.95
966821--966890	36	1.9	36	82	5	88	34	15	25	24	1.95
966843--966890	20	2.8	16	76	17	51	33	16	25	25	1.96
969924--970085	54	3.0	54	86	1	209	37	12	21	28	1.91
970450--970529	22	3.6	22	96	1	133	33	15	13	37	1.86
971195--971381	76	2.5	76	91	0	293	24	19	21	35	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12