genome.fa.s8000.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008000.1 Hibiscus syriacus cultivar Beakdansim tig00110457_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1646480

Tables:   1   2   3   4   5   6   7   8   9   

This is table  1  of  9  ( 964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10124--10174	22	2.3	22	89	0	75	35	3	3	56	1.36
10153--10213	27	2.3	26	83	5	70	31	8	6	54	1.56
13945--14059	28	4.1	28	96	0	203	47	26	10	14	1.77
14928--14995	28	2.4	30	78	11	72	27	7	8	55	1.57
21102--21182	32	2.6	29	76	23	83	12	12	25	49	1.75
43587--43638	15	3.2	17	72	22	58	36	21	0	42	1.53
51556--51604	24	2.0	25	88	11	75	24	28	16	30	1.96
51644--51696	19	2.8	19	94	0	88	22	28	18	30	1.98
57337--57364	2	14.0	2	100	0	56	50	0	0	50	1.00
59992--60190	76	2.6	77	84	2	276	36	10	17	35	1.84
60134--60255	54	2.3	53	81	7	138	34	11	22	31	1.90
60243--60311	22	3.1	22	89	6	95	31	13	23	31	1.92
62186--62251	30	2.2	30	100	0	132	36	25	7	30	1.84
62925--63000	32	2.7	30	77	18	74	36	5	2	55	1.37
64190--64226	2	18.5	2	100	0	74	48	0	0	51	1.00
64575--64711	68	2.0	68	97	0	256	33	5	10	50	1.60
65071--65110	17	2.3	18	91	4	64	27	5	7	60	1.45
76204--76279	8	9.5	8	77	18	70	75	1	13	10	1.12
76228--76260	10	3.4	10	95	4	59	81	0	9	9	0.87
76227--76279	19	2.6	21	82	17	76	75	0	13	11	1.05
76250--76286	13	2.8	13	95	0	65	75	0	13	10	1.04
76227--76286	13	4.5	13	73	19	61	76	0	13	10	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77161--77903	136	5.5	136	88	3	1024	33	17	22	25	1.96
77158--77903	271	2.8	269	88	3	1072	33	17	22	25	1.96
79796--79932	68	2.0	68	98	0	265	32	3	11	51	1.56
80287--80325	17	2.3	17	82	8	53	28	5	7	58	1.47
85135--85159	10	2.5	10	100	0	50	64	28	0	8	1.22
88239--88282	20	2.2	20	92	4	72	27	25	11	36	1.90
91286--91404	42	2.8	42	94	0	211	18	19	16	45	1.86
91577--91627	21	2.3	23	86	10	70	50	0	0	49	1.00
91625--91695	5	13.8	5	74	11	54	54	1	0	43	1.08
91614--91688	22	3.3	22	73	14	71	52	1	0	46	1.09
91712--91782	10	7.3	10	68	16	51	42	0	2	54	1.14
91697--91782	29	3.0	28	77	13	93	40	0	2	56	1.12
92110--92159	20	2.5	20	100	0	100	34	16	10	40	1.81
92142--92213	15	4.9	15	72	3	65	30	15	8	45	1.75
92142--92213	30	2.4	29	86	2	99	30	15	8	45	1.75
93112--93165	22	2.4	22	84	9	65	37	9	1	51	1.45
98715--98749	18	1.9	18	88	11	54	48	17	8	25	1.75
99073--99099	5	5.4	5	100	0	54	59	0	0	40	0.98
102393--102430	19	2.0	20	89	5	60	26	18	15	39	1.91
104522--104550	14	2.0	15	93	6	51	24	20	6	48	1.74
105311--105352	15	2.7	15	88	3	57	14	2	11	71	1.24
105359--105416	17	3.4	17	90	0	89	46	0	10	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105434--105481	23	2.1	23	88	7	71	52	0	8	39	1.32
105414--105529	56	2.1	57	82	11	141	50	0	8	41	1.33
105378--105477	39	2.5	40	93	6	177	50	0	9	41	1.34
105477--105574	12	8.1	12	70	15	67	48	0	10	40	1.37
105471--105633	36	4.5	35	86	8	211	47	0	10	41	1.38
105599--105646	22	2.1	23	88	7	71	47	2	8	41	1.45
110457--110514	29	2.0	28	87	9	82	51	0	0	48	1.00
110483--110707	116	2.0	116	83	5	287	45	8	8	37	1.65
112179--112223	3	16.0	3	82	13	60	64	0	0	35	0.94
112472--113106	113	5.4	113	73	12	541	28	19	14	37	1.91
112677--112750	22	3.6	21	69	23	68	18	22	9	48	1.77
112679--112758	39	2.1	39	92	4	135	20	22	8	48	1.76
112563--112825	135	1.9	136	86	3	361	27	19	14	38	1.91
112702--113094	113	3.5	113	90	1	612	27	19	14	38	1.90
113120--113301	76	2.4	76	89	1	276	33	20	19	25	1.97
113326--113617	156	1.9	157	91	0	487	35	12	13	38	1.83
114134--114193	22	2.7	22	84	0	84	40	11	13	35	1.81
120941--120994	12	4.3	12	76	17	56	59	5	12	22	1.54
120937--120993	26	2.2	26	93	0	96	59	5	14	21	1.54
121053--121094	7	6.0	7	83	10	59	54	16	14	14	1.71
121061--121090	15	2.0	15	100	0	60	60	13	13	13	1.60
122606--122669	21	3.2	20	70	22	55	64	0	4	31	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123153--123211	29	2.0	29	87	6	84	52	0	0	47	1.00
123180--123404	116	2.0	116	82	5	278	44	8	8	37	1.66
124870--124914	3	16.0	3	82	13	51	62	0	0	37	0.96
124872--124918	13	3.5	13	80	11	51	63	0	0	36	0.94
124848--124917	33	2.2	32	84	7	88	58	0	0	41	0.98
124874--124915	14	3.1	14	79	3	50	64	0	0	35	0.94
127558--127973	200	2.1	199	88	7	632	30	12	16	40	1.86
128384--128431	18	2.8	17	81	6	60	29	27	8	35	1.86
132185--132220	9	3.8	10	92	7	58	11	30	38	19	1.86
132827--132935	36	3.3	35	70	23	99	38	19	21	21	1.94
132787--132935	67	2.3	67	89	2	221	37	18	21	22	1.94
132795--132973	31	5.7	31	71	19	131	36	17	21	24	1.94
132863--132973	58	1.9	58	86	0	159	36	15	23	25	1.94
134954--134979	2	13.0	2	100	0	52	50	0	0	50	1.00
134952--135012	18	3.4	19	73	13	58	42	3	0	54	1.17
137958--138247	153	1.9	156	86	5	426	48	6	17	27	1.72
144170--144345	64	2.8	63	78	5	167	26	21	18	33	1.96
150136--150201	18	3.4	19	87	6	89	36	30	19	13	1.91
151113--151268	63	2.5	64	79	9	176	29	23	17	29	1.97
151113--151289	64	2.8	62	80	9	189	28	23	18	30	1.97
155032--155181	63	2.4	63	82	5	169	28	20	17	33	1.95
158271--158307	15	2.5	15	100	0	74	5	21	67	5	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159835--159991	63	2.5	64	82	5	185	29	21	17	31	1.96
159835--160011	64	2.8	62	82	7	196	28	21	18	32	1.96
161098--161137	17	2.3	18	86	4	55	27	10	15	47	1.77
164030--164060	12	2.6	12	94	0	53	22	29	6	41	1.78
169427--169872	40	10.5	41	69	17	202	23	27	18	30	1.98
169366--170089	129	5.5	129	87	3	923	26	26	17	30	1.97
169366--170090	257	2.8	257	86	3	950	26	26	17	30	1.97
170043--170137	48	2.0	48	89	4	147	35	27	9	27	1.88
172673--172716	16	2.8	16	83	10	56	34	4	6	54	1.47
173164--173190	13	2.1	13	100	0	54	37	14	25	22	1.93
173198--173236	4	9.8	4	88	0	60	25	0	5	69	1.09
173198--173232	12	2.9	12	100	0	70	25	0	5	68	1.11
178211--178258	16	3.0	16	87	0	69	12	16	25	45	1.82
182177--182230	28	1.9	28	84	0	72	33	7	1	57	1.37
185776--185822	24	2.0	24	86	0	67	19	17	29	34	1.94
187988--188020	17	2.0	17	94	5	59	3	12	24	60	1.46
188001--188076	24	3.0	25	88	9	109	10	9	22	57	1.60
189350--189864	54	9.6	54	91	0	791	37	16	11	33	1.85
197613--197647	18	1.9	18	88	0	52	60	0	8	31	1.27
202811--202868	2	29.0	2	100	0	116	50	0	0	50	1.00
203781--203838	20	2.7	20	78	10	62	29	20	17	32	1.95
203826--203987	64	2.5	63	84	4	198	27	22	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208923--208980	20	2.7	20	78	10	62	29	20	17	32	1.95
208968--209129	64	2.5	64	80	5	193	25	22	17	33	1.96
211444--211609	85	2.0	85	83	4	210	30	18	19	31	1.96
211587--211635	13	3.8	13	88	0	80	32	18	20	28	1.96
211581--211635	26	2.1	26	89	0	83	36	16	20	27	1.93
214815--214871	26	2.1	27	83	3	71	47	14	7	31	1.70
214901--214964	27	2.3	28	91	5	103	54	4	6	34	1.46
218620--218654	16	2.4	14	90	9	52	62	11	8	17	1.52
218717--218821	16	6.2	16	75	12	84	57	21	10	10	1.62
218714--218784	32	2.2	32	89	0	106	56	22	11	9	1.64

Tables:   1   2   3   4   5   6   7   8   9