genome.fa.s8000.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008000.1 Hibiscus syriacus cultivar Beakdansim tig00110457_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1646480

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1262641--1262672	3	10.7	3	93	0	55	34	3	31	31	1.73
1264187--1264731	200	2.7	198	86	4	751	39	12	15	31	1.86
1267262--1267987	200	3.6	197	81	8	729	39	14	15	30	1.87
1267988--1268150	87	1.9	87	97	0	308	33	14	12	39	1.84
1268072--1268116	23	2.0	23	95	0	81	37	20	8	33	1.83
1268683--1268814	62	2.1	62	85	2	176	25	26	17	31	1.97
1270667--1270710	21	2.1	21	86	0	61	47	0	0	52	1.00
1271629--1271658	16	1.9	16	93	6	53	60	3	3	33	1.30
1276876--1277058	92	2.0	91	83	3	233	48	3	16	30	1.64
1277770--1277949	91	2.0	89	88	4	263	44	15	6	33	1.72
1284117--1284157	13	3.1	14	82	10	50	46	9	4	39	1.58
1284598--1284623	13	2.0	13	100	0	52	38	15	23	23	1.92
1284613--1284660	18	2.6	19	83	6	62	33	18	29	18	1.95
1287586--1287617	15	2.1	15	100	0	64	31	6	37	25	1.81
1294998--1295045	18	2.7	18	83	3	62	35	8	27	29	1.86
1297532--1297604	18	4.1	18	72	11	62	54	4	1	39	1.28
1298089--1298161	18	4.1	18	72	11	62	54	4	1	39	1.28
1297282--1298399	557	2.0	557	99	0	2220	42	9	9	38	1.70
1298896--1298953	2	29.5	2	96	3	109	48	0	0	51	1.00
1309232--1309268	16	2.3	16	100	0	74	24	5	24	45	1.74
1313384--1313435	20	2.6	20	96	0	95	38	26	13	21	1.90
1313425--1313523	21	4.8	20	72	6	72	36	23	19	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1313490--1313683	20	9.6	20	81	5	221	35	25	19	19	1.95
1313490--1313683	60	3.2	60	83	0	253	35	25	19	19	1.95
1314065--1314135	33	2.2	33	92	0	115	11	22	18	47	1.80
1314268--1314312	19	2.4	19	88	0	63	44	26	20	8	1.80
1314308--1314419	14	6.8	18	71	22	86	10	25	21	42	1.85
1314313--1314426	33	3.5	33	90	2	194	10	24	20	44	1.82
1316124--1316596	185	2.5	186	99	0	939	21	12	19	46	1.83
1316124--1316596	93	5.1	93	99	0	939	21	12	19	46	1.83
1316640--1316768	19	7.3	19	75	17	125	45	28	17	8	1.77
1316676--1316768	33	2.8	32	91	4	150	46	27	18	7	1.76
1316640--1316768	52	2.5	52	74	14	140	45	28	17	8	1.77
1316764--1316898	19	7.6	19	75	16	128	11	19	23	45	1.82
1316786--1316842	14	3.7	14	77	20	60	10	21	22	45	1.82
1316769--1316861	33	2.8	33	95	0	168	10	20	21	47	1.80
1318803--1318838	14	2.6	14	95	0	63	33	0	22	44	1.53
1318945--1319046	19	5.6	19	84	13	151	44	17	23	14	1.86
1319075--1319353	19	15.7	19	81	14	355	14	20	17	47	1.83
1319075--1319314	71	3.4	71	83	11	355	15	20	17	47	1.83
1319043--1319377	142	2.4	137	89	6	505	14	20	18	46	1.83
1319075--1319353	52	5.2	52	90	6	354	14	20	17	47	1.83
1321683--1321707	12	2.1	12	100	0	50	0	28	0	72	0.86
1321882--1321928	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322602--1322970	20	18.5	20	86	4	458	20	18	26	34	1.96
1335026--1335058	12	2.6	13	90	4	50	63	0	30	6	1.18
1352820--1352859	21	1.9	21	94	0	71	40	30	15	15	1.87
1355920--1355979	24	2.5	24	88	0	93	35	23	0	41	1.55
1355920--1355980	18	3.4	18	77	8	61	34	22	0	42	1.54
1355920--1355980	12	5.1	12	75	0	59	34	22	0	42	1.54
1356108--1356208	23	4.4	23	71	5	69	36	22	20	19	1.95
1356110--1356208	46	2.2	46	86	0	144	36	22	21	20	1.95
1356331--1356478	45	3.3	45	85	3	156	29	17	11	41	1.85
1356359--1356441	15	5.7	14	74	16	71	31	16	10	40	1.83
1361440--1361492	20	2.6	20	82	8	63	26	18	22	32	1.97
1361526--1361575	18	2.6	20	81	15	61	30	18	26	26	1.98
1362930--1363119	95	2.0	95	100	0	380	26	22	25	26	2.00
1364508--1364580	24	3.0	24	91	4	110	31	17	12	38	1.87
1366017--1366047	14	2.2	14	94	0	53	19	3	0	77	0.90
1367074--1367106	17	1.9	17	93	0	57	6	12	12	69	1.35
1371182--1372255	84	12.9	84	85	3	1328	30	25	19	24	1.98
1374016--1374042	14	1.9	14	100	0	54	18	0	0	81	0.69
1385376--1385532	64	2.4	63	80	10	158	28	18	20	33	1.96
1392278--1392431	64	2.4	64	81	6	170	28	18	19	33	1.96
1393821--1393869	20	2.4	20	80	13	55	69	0	2	28	1.00
1394488--1394517	12	2.5	12	94	0	51	26	23	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1394822--1394866	20	2.3	20	80	3	56	46	4	2	46	1.35
1408886--1408915	13	2.4	13	94	5	53	43	0	30	26	1.55
1423116--1423152	20	1.9	19	89	10	58	45	10	24	18	1.81
1430019--1430081	23	2.9	22	90	4	92	15	22	28	33	1.95
1430264--1430308	2	22.5	2	95	0	81	48	0	2	48	1.13
1436800--1436861	26	2.4	26	100	0	124	33	16	25	24	1.95
1441931--1441976	19	2.5	17	83	13	56	73	0	6	19	1.04
1442056--1442147	27	3.4	28	77	15	93	67	0	4	28	1.10
1442264--1442288	13	1.9	13	100	0	50	68	0	8	24	1.16
1442309--1442352	3	13.3	3	95	4	52	61	0	0	38	0.96
1442400--1442429	9	3.4	9	95	4	53	76	0	0	23	0.78
1443699--1444762	106	10.0	106	92	0	1664	22	18	25	33	1.96
1445724--1445778	22	2.5	22	96	0	101	23	12	25	38	1.90
1446400--1446441	14	2.9	14	80	16	50	0	14	7	78	0.95
1449833--1449870	19	2.0	20	89	5	60	68	0	23	7	1.16
1451028--1451072	19	2.5	17	82	13	54	73	0	8	17	1.08
1451164--1451216	18	2.9	18	83	8	54	71	0	1	26	0.96
1451163--1451236	22	3.4	22	78	10	73	67	0	4	28	1.09
1451366--1451390	12	2.1	12	100	0	50	68	0	8	24	1.16
1451480--1451517	10	4.1	9	86	13	51	65	0	0	34	0.93
1451515--1451547	2	16.5	2	100	0	66	51	0	0	48	1.00
1452963--1453030	24	3.0	22	76	8	64	63	20	10	5	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1453351--1453411	31	2.0	31	90	6	97	57	6	3	32	1.41
1455192--1455349	21	7.8	20	72	7	86	39	24	17	18	1.92
1455316--1455509	20	9.6	20	81	5	221	35	25	19	19	1.95
1455316--1455509	60	3.2	60	83	0	253	35	25	19	19	1.95
1455892--1455962	33	2.2	33	89	0	106	11	21	18	49	1.78
1456042--1456149	21	5.7	20	74	15	95	45	19	24	11	1.82
1456042--1456118	21	3.8	20	82	5	100	45	16	24	12	1.83
1456041--1456118	41	1.9	41	97	0	147	44	16	25	12	1.83
1456054--1456160	19	5.7	19	71	16	80	46	20	22	10	1.80
1456156--1456253	19	5.7	19	70	22	90	10	23	22	43	1.83
1456178--1456267	14	5.7	14	72	23	72	8	24	23	43	1.82
1456161--1456275	33	3.5	33	97	0	221	9	23	20	46	1.80
1457968--1458340	93	4.0	93	98	0	728	22	12	18	46	1.83
1458346--1458475	19	7.3	19	75	17	127	10	18	23	46	1.80
1458363--1458419	14	3.7	14	77	20	60	10	21	22	45	1.82
1458346--1458438	33	2.8	33	95	0	168	10	20	21	47	1.80
1460393--1460428	14	2.6	14	95	0	63	33	0	22	44	1.53
1460535--1460612	19	4.4	19	81	15	112	46	17	21	14	1.84
1460572--1460626	14	3.6	14	73	21	56	45	20	23	10	1.82
1460553--1460630	33	2.4	33	100	0	156	43	19	24	12	1.86
1460637--1460789	33	4.5	33	72	16	150	14	22	16	45	1.84
1460659--1460875	19	12.4	19	75	19	231	14	21	17	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1460637--1460847	52	4.0	52	98	0	395	14	22	16	46	1.83
1460678--1460889	33	6.2	33	76	14	225	13	21	18	46	1.83
1463171--1463195	12	2.1	12	100	0	50	0	28	0	72	0.86
1463370--1463416	24	2.0	24	87	8	69	38	21	14	25	1.92
1464099--1464328	20	11.5	20	85	1	237	19	18	24	36	1.94
1464315--1464397	21	4.0	21	73	6	78	25	16	24	33	1.96
1464295--1464393	42	2.4	43	77	11	100	21	18	23	37	1.94
1464771--1464811	18	2.2	19	83	12	50	56	24	14	4	1.58
1465036--1465077	14	3.0	14	85	0	57	57	19	14	9	1.64
1468573--1468597	2	12.5	2	100	0	50	48	0	0	52	1.00

Tables:   1   2   3   4   5   6   7   8   9