genome.fa.s8000.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008000.1 Hibiscus syriacus cultivar Beakdansim tig00110457_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1646480

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 964 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818612--818646	2	17.5	2	100	0	70	48	0	51	0	1.00
821020--821344	36	9.4	36	73	14	200	40	12	19	28	1.87
820969--821134	65	2.5	67	87	4	221	40	9	19	30	1.83
821104--821168	21	3.4	21	66	24	61	40	10	23	26	1.87
821083--821344	36	7.4	36	77	10	236	39	12	19	28	1.88
821269--821330	20	3.3	20	64	25	53	40	9	22	27	1.85
821259--821600	102	3.4	102	90	2	528	36	10	20	32	1.87
821462--821548	37	2.4	36	84	1	102	39	13	19	27	1.90
821830--822152	106	3.0	106	90	0	484	22	20	24	33	1.97
822752--822843	33	2.8	33	86	8	125	40	20	9	29	1.85
823746--823883	69	2.0	69	85	5	190	26	14	21	36	1.92
823964--824006	16	2.6	16	85	3	50	2	13	4	79	1.00
827167--827205	16	2.4	17	86	4	53	74	0	7	17	1.05
830176--830240	22	3.1	22	78	17	84	27	26	20	26	1.99
830160--830240	40	2.0	40	90	0	126	29	28	18	23	1.98
830160--830234	18	3.9	18	80	13	78	29	30	18	21	1.97
831039--831079	21	2.0	21	85	9	57	21	34	31	12	1.91
831918--831962	19	2.3	20	81	14	58	8	33	0	57	1.30
832423--832464	21	2.0	21	85	0	57	28	28	26	16	1.97
833150--833194	23	2.0	23	81	0	54	22	26	24	26	2.00
839225--839266	21	2.0	21	85	0	57	28	28	26	16	1.97
839953--839997	23	2.0	23	86	0	63	20	26	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
842121--842166	22	2.1	22	87	0	65	39	2	8	50	1.46
842681--842711	2	15.5	2	100	0	62	51	0	0	48	1.00
842711--842738	2	14.0	2	100	0	56	50	0	50	0	1.00
850688--850730	21	2.1	21	87	12	63	23	18	34	23	1.96
870122--870249	59	2.2	59	84	0	157	28	15	22	33	1.95
877538--877575	14	2.7	14	84	11	51	21	10	28	39	1.86
879895--879948	25	2.2	25	96	0	99	38	20	7	33	1.80
883785--883948	82	2.0	83	85	4	226	25	16	14	43	1.86
887982--888015	13	2.8	13	91	8	54	41	5	32	20	1.76
891824--891862	19	2.1	18	86	13	53	64	0	15	20	1.30
896887--896972	35	2.5	35	86	0	109	41	20	0	37	1.53
896941--896983	21	2.0	21	100	0	86	46	13	0	39	1.44
897106--897139	16	2.0	18	88	11	54	26	2	5	64	1.30
897608--897855	130	1.9	130	93	0	424	36	13	14	35	1.85
899132--899315	60	3.1	60	88	1	271	35	11	15	36	1.85
900175--900206	16	1.9	17	93	6	57	40	0	15	43	1.47
900478--900689	114	1.8	114	83	6	280	22	16	16	44	1.86
902817--902842	2	13.0	2	100	0	52	50	0	0	50	1.00
910461--910511	20	2.5	20	81	6	59	31	23	9	35	1.87
910542--910595	20	2.6	20	82	5	63	31	14	20	33	1.93
914297--914326	15	1.9	16	93	6	53	53	6	0	40	1.27
915485--915519	13	2.7	13	100	0	70	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917067--917145	3	26.3	3	82	10	90	60	0	2	36	1.10
917076--917157	17	5.1	16	77	14	80	59	0	1	39	1.05
917067--917157	26	3.8	24	79	13	100	59	0	2	38	1.10
917069--917157	14	6.4	14	77	11	76	59	0	2	38	1.10
917348--917752	55	7.5	55	83	6	479	29	24	15	30	1.95
917334--917808	106	4.5	106	82	6	477	29	24	14	31	1.95
917443--917752	161	1.9	163	87	2	462	29	25	14	30	1.95
917701--917797	45	2.2	45	88	0	140	31	20	14	32	1.93
917646--917827	100	1.8	100	81	2	231	28	24	14	32	1.94
917760--918342	56	10.5	56	85	4	582	25	22	18	33	1.96
917778--918292	169	3.1	168	82	4	571	26	22	18	33	1.96
918143--918354	54	3.9	54	88	1	327	20	24	21	33	1.97
918356--918437	37	2.2	37	87	8	114	20	18	17	43	1.88
918735--918883	37	4.1	36	83	6	185	24	17	21	36	1.95
918735--918883	73	2.0	73	87	5	212	24	17	21	36	1.95
920115--920626	125	4.1	125	88	1	706	24	27	16	32	1.96
920115--920626	249	2.1	250	87	1	740	24	27	16	32	1.96
921763--921809	2	24.0	2	95	4	87	48	0	0	51	1.00
924499--924553	21	2.6	21	91	2	83	20	16	21	41	1.90
927234--927290	2	29.0	2	96	3	107	50	0	0	49	1.00
927932--927989	3	19.3	3	82	7	73	58	0	5	36	1.20
931786--931812	13	2.1	13	100	0	54	48	22	0	29	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942606--942648	22	2.0	22	90	0	68	30	13	16	39	1.87
949120--949344	69	3.3	67	77	11	226	34	11	27	26	1.91
949403--949468	33	2.0	33	96	0	123	45	10	24	19	1.82
958647--958681	18	1.9	18	94	0	61	54	2	8	34	1.46
961056--961133	29	2.7	29	95	0	138	48	12	7	30	1.69
961653--961740	41	2.1	42	85	6	117	32	21	20	25	1.97
964907--964940	2	17.5	2	93	6	61	50	0	0	50	1.00
964910--964996	24	3.5	26	74	15	76	54	0	0	45	1.00
964952--964991	19	2.1	19	85	0	53	55	0	0	45	0.99
965009--965059	12	4.3	12	90	5	77	27	50	13	7	1.69
964994--965059	23	2.8	24	81	4	80	25	46	15	12	1.80
965484--965533	10	5.0	10	82	0	55	26	30	0	44	1.55
965572--965624	18	3.2	17	84	7	65	32	3	1	62	1.24
967939--968023	35	2.5	33	78	14	91	27	8	10	54	1.63
980052--980096	17	2.6	17	96	0	81	28	35	6	28	1.83
984285--984377	44	2.0	45	87	6	134	30	11	10	47	1.74
988741--988823	24	3.5	24	86	0	112	55	21	15	7	1.64
988765--988795	14	2.2	14	94	0	53	54	22	16	6	1.64
989029--989103	24	3.1	24	82	0	96	60	17	9	13	1.59
990053--990085	2	16.5	2	100	0	66	48	0	0	51	1.00
990476--990530	27	2.0	27	89	6	85	25	20	7	47	1.75
997903--997950	23	2.1	23	88	0	69	8	22	18	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998762--998811	24	2.1	24	85	7	66	24	2	14	60	1.45
1001105--1001137	17	1.9	17	93	0	57	21	27	24	27	1.99
1005682--1005732	20	2.5	20	84	6	59	13	15	0	70	1.17
1009010--1009059	24	2.1	23	82	10	57	22	2	14	62	1.42
1010137--1010262	28	4.5	28	93	3	209	22	6	24	46	1.75
1017663--1017728	3	21.7	3	84	3	87	37	1	1	59	1.16
1019505--1019551	11	4.3	11	79	17	53	29	0	0	70	0.88
1025391--1025427	8	4.6	8	93	0	65	81	0	18	0	0.70
1029541--1029598	22	2.6	22	91	0	98	31	17	15	36	1.91
1030330--1030437	45	2.4	45	84	3	126	25	25	20	28	1.99
1030375--1030613	76	3.1	76	90	0	379	28	18	18	34	1.95
1030271--1030503	121	1.9	121	92	1	387	27	20	19	32	1.97
1030776--1030850	3	24.7	3	86	2	105	34	0	0	65	0.93
1031920--1031960	2	20.5	2	100	0	82	48	0	0	51	1.00
1032421--1032674	136	1.9	135	84	7	345	36	7	7	49	1.58
1035078--1035139	31	2.2	28	83	13	74	29	29	24	17	1.97
1035730--1035772	17	2.5	17	81	11	52	69	2	4	23	1.18
1039948--1040150	109	1.9	110	84	5	277	26	23	4	45	1.72
1042913--1043086	35	5.0	35	89	4	255	33	20	25	20	1.97
1042923--1043086	71	2.4	68	90	4	256	32	21	24	21	1.98
1043915--1044063	81	1.8	81	89	2	237	46	7	12	33	1.69
1043915--1044080	81	2.0	80	82	6	199	45	9	10	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044553--1044594	19	2.4	19	88	11	63	4	33	0	61	1.17
1050423--1050635	103	2.1	103	95	0	381	26	14	23	35	1.93
1050652--1050742	23	4.0	23	88	0	128	21	28	24	25	1.99
1054571--1054674	32	3.0	34	75	13	113	37	25	14	23	1.92
1054547--1054666	38	3.3	38	75	13	144	38	24	15	21	1.92
1055323--1055362	17	2.2	19	83	16	50	75	0	0	25	0.81
1055323--1055378	28	2.0	27	82	3	67	71	0	0	28	0.86
1055499--1055544	15	3.1	15	80	0	56	26	0	4	69	1.07
1055700--1055734	16	2.2	16	94	0	61	42	0	0	57	0.99
1066821--1066875	19	2.9	19	78	5	58	30	3	0	65	1.10

Tables:   1   2   3   4   5   6   7   8   9