genome.fa.s8016.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008016.1 Hibiscus syriacus cultivar Beakdansim tig00110482_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5469637

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  2  of  25  ( 2971 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318749--318857	20	5.4	20	86	2	139	21	22	22	33	1.97
321281--321332	24	2.2	24	82	0	59	36	21	19	23	1.95
322160--322226	20	3.3	20	82	0	89	25	17	23	32	1.97
322213--322326	20	5.7	20	83	2	147	21	20	20	38	1.94
322159--322326	40	4.2	40	80	8	153	23	19	20	36	1.95
322326--322389	21	3.0	21	88	2	92	43	17	21	17	1.87
324233--324279	16	2.9	16	87	6	69	46	14	8	29	1.74
327360--327400	14	3.0	14	96	3	75	29	7	21	41	1.80
329600--329816	46	4.8	46	89	1	296	32	22	6	39	1.79
329897--329976	40	2.0	40	87	0	115	22	26	25	26	2.00
330832--331054	114	2.0	114	99	0	437	33	19	10	36	1.86
332529--332559	15	2.1	14	94	5	53	64	0	22	12	1.27
333524--333598	32	2.3	32	79	6	80	33	21	16	29	1.95
334013--334381	20	18.5	20	85	4	458	34	26	18	20	1.96
335055--335101	24	2.0	24	87	8	69	25	14	21	38	1.92
335276--335300	12	2.1	12	100	0	50	72	0	28	0	0.86
337602--337926	19	18.4	19	80	16	396	47	17	20	14	1.83
337602--337926	33	9.2	34	78	13	290	47	17	20	14	1.83
337630--337948	52	6.0	52	93	4	541	46	16	21	14	1.83
337955--338056	19	5.6	19	85	12	151	14	23	17	44	1.86
338163--338199	14	2.6	14	91	0	65	45	21	0	32	1.52
338180--338250	37	1.9	37	97	0	133	52	16	1	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338180--338259	37	2.2	37	90	0	124	53	17	1	27	1.51
340065--340198	19	7.6	19	76	18	137	46	23	19	10	1.81
340120--340176	14	3.7	14	77	20	60	45	24	21	8	1.80
340065--340193	33	3.8	33	90	5	177	47	24	18	10	1.79
340194--340322	19	7.3	19	75	17	125	8	17	28	45	1.77
340194--340285	33	2.8	33	93	3	150	7	18	28	45	1.76
340366--340745	93	4.1	93	98	0	744	46	18	12	22	1.83
340366--340745	185	2.0	186	98	0	744	46	18	12	22	1.83
342435--342537	19	5.9	19	73	21	100	43	21	24	10	1.84
342440--342532	33	2.8	33	96	0	168	44	22	23	9	1.82
342459--342515	14	3.7	14	75	20	60	43	22	24	8	1.81
342549--342603	14	3.6	14	73	21	56	9	27	23	40	1.85
342727--342795	32	2.2	32	91	0	111	46	20	21	11	1.82
342746--342795	16	3.0	18	69	22	54	44	22	22	12	1.85
342973--343027	22	2.5	22	81	0	74	20	16	40	23	1.91
343173--343366	20	9.6	20	82	5	221	19	19	25	35	1.95
343173--343366	60	3.2	60	83	0	253	19	19	25	35	1.95
343359--343435	21	3.7	20	70	13	57	27	16	23	32	1.96
343421--343472	20	2.6	20	96	0	95	21	13	26	38	1.90
344081--344136	21	2.7	20	75	5	58	42	0	3	53	1.18
353107--353371	132	2.0	132	95	0	476	38	12	19	28	1.89
360371--360421	22	2.4	21	86	3	66	45	1	1	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360513--360593	31	2.8	29	80	10	94	39	7	8	44	1.63
369150--369245	21	4.6	21	69	10	52	15	12	42	29	1.84
369631--369690	21	2.9	21	72	2	59	16	1	40	41	1.58
369777--369893	54	2.2	54	88	0	171	14	14	33	37	1.87
369831--369895	34	1.9	34	84	6	87	16	16	32	33	1.92
370098--370129	12	2.5	13	90	10	57	12	12	0	75	1.06
373536--373660	44	2.8	44	97	0	232	35	8	10	45	1.69
374024--374071	2	24.0	2	100	0	96	50	0	50	0	1.00
376047--376081	12	2.9	12	86	0	52	8	48	0	42	1.33
376047--376085	18	2.1	19	85	4	53	7	48	0	43	1.31
379004--379096	3	30.7	3	86	2	123	37	0	2	60	1.09
379789--379817	13	2.2	13	100	0	58	0	31	62	6	1.22
391211--391273	21	2.9	21	83	4	63	20	38	25	15	1.92
391255--391294	21	1.9	21	89	0	62	25	40	25	10	1.86
393572--393596	13	1.9	13	100	0	50	24	16	0	60	1.36
395250--395318	2	35.0	2	97	2	131	49	0	0	50	1.00
400611--400673	31	2.0	31	100	0	126	34	22	9	33	1.86
401755--401794	21	1.9	21	89	0	62	10	25	40	25	1.86
401776--401838	21	2.9	21	80	4	72	19	25	34	20	1.96
409793--409961	54	3.2	54	84	5	202	37	15	22	24	1.93
410331--410381	22	2.4	21	83	3	57	37	9	13	39	1.78
411133--411764	75	8.4	76	97	1	1179	21	21	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411887--411986	3	32.7	3	77	15	98	37	0	0	63	0.95
411880--411970	18	5.1	18	81	13	109	37	0	0	62	0.95
411888--411992	34	2.9	36	85	13	121	37	0	0	62	0.95
412836--413300	233	2.0	231	96	3	864	30	14	12	41	1.84
414248--414340	45	2.1	45	97	0	177	26	24	15	33	1.95
418380--418446	33	2.0	33	100	0	134	49	26	11	11	1.74
419759--419865	52	2.1	49	86	6	151	41	16	5	36	1.72
421689--421722	13	2.6	13	86	13	52	38	0	14	47	1.45
422383--422424	15	2.7	15	79	13	50	47	0	2	50	1.14
422407--422440	17	2.0	17	88	0	50	55	2	0	41	1.15
427913--427967	27	2.1	25	86	6	74	25	9	29	36	1.87
428118--428159	21	2.0	21	90	4	68	30	0	2	66	1.04
430248--430287	21	2.0	20	90	5	62	37	0	7	55	1.29
430894--430955	31	2.0	31	93	6	108	33	25	11	29	1.91
430956--431030	37	2.0	37	100	0	150	36	21	2	40	1.67
431112--431163	19	2.5	22	87	12	74	23	30	28	17	1.97
431187--431383	101	1.9	103	92	4	337	37	22	13	26	1.92
431553--431801	20	12.2	20	74	13	197	42	21	19	16	1.89
431610--431794	40	4.5	40	90	4	271	41	22	19	16	1.90
431893--431927	18	1.9	18	100	0	70	34	37	11	17	1.85
432406--432451	5	8.6	5	97	2	65	0	19	54	26	1.44
432699--432733	13	2.6	14	86	9	54	45	0	2	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446493--446568	36	2.1	36	82	2	100	35	0	21	43	1.53
452371--452414	23	2.0	23	95	4	81	38	9	31	20	1.84
458692--458722	16	1.9	16	100	0	62	58	19	12	9	1.62
458808--458847	13	3.0	13	88	3	53	62	15	7	15	1.53
459358--459405	20	2.3	20	75	3	51	39	10	16	33	1.83
463942--464099	72	2.1	74	87	3	221	53	13	5	27	1.62
465034--467229	828	2.7	828	98	0	4251	34	20	15	29	1.93
468758--468806	6	8.3	6	84	2	64	4	16	44	34	1.66
468886--469122	21	11.4	21	64	18	95	32	24	21	22	1.98
468884--469181	42	7.2	42	93	1	494	31	24	20	23	1.98
468884--469181	82	3.6	83	93	1	490	31	24	20	23	1.98
470000--470078	33	2.4	33	95	0	140	46	22	20	10	1.80
471752--471793	22	1.9	22	90	0	66	35	9	7	47	1.64
471949--472287	113	3.0	114	96	3	618	43	13	3	39	1.61
477656--477686	2	16.0	2	93	6	55	51	0	0	48	1.00
481676--481736	31	2.0	31	96	0	113	40	22	11	24	1.87
486582--487670	549	2.0	538	94	4	1918	36	14	13	35	1.86
488580--488632	21	2.5	21	84	0	70	20	26	18	33	1.96
488622--488708	20	4.3	21	76	5	90	40	18	18	22	1.91
489535--489586	22	2.3	23	83	6	61	19	17	21	42	1.89
491913--491999	20	4.3	21	84	8	119	36	24	20	18	1.95
491913--492001	40	2.2	40	90	4	135	35	23	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492049--492144	33	2.9	34	84	3	122	15	23	18	41	1.89
493631--493670	19	2.2	19	90	4	64	25	17	35	22	1.95
494153--494236	19	4.3	20	89	7	129	36	22	20	20	1.95
494153--494238	39	2.2	38	91	2	145	36	23	20	19	1.95
494281--494443	20	8.5	20	83	8	205	20	17	20	41	1.90
496318--496371	20	2.7	20	94	0	90	50	22	16	11	1.77
496319--496388	20	3.5	20	90	0	86	42	24	17	15	1.88
496433--496478	20	2.3	20	84	0	56	21	21	23	32	1.98
497045--497239	20	9.6	20	80	2	228	25	21	16	36	1.94
497045--497239	61	3.2	61	88	0	275	25	21	16	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25