genome.fa.s8071.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008071.1 Hibiscus syriacus cultivar Beakdansim tig00110569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1969971

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 922 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164601--164781	65	2.8	65	93	0	308	37	12	19	30	1.89
164461--165037	270	2.1	264	82	7	662	37	12	19	30	1.89
164666--164883	102	2.1	102	93	0	373	37	12	19	30	1.89
164764--164949	66	2.8	66	86	3	252	35	11	20	32	1.88
164507--165030	168	3.1	165	89	4	791	37	12	19	30	1.89
164899--164985	37	2.4	36	88	1	120	40	13	20	25	1.89
164875--165074	102	1.9	104	92	2	341	37	13	20	30	1.90
166272--166621	183	1.9	183	96	0	646	30	21	21	27	1.98
170560--170661	34	2.9	36	88	7	163	28	13	13	44	1.82
190991--191029	20	2.0	20	85	14	55	58	5	7	28	1.47
191472--191876	202	2.0	202	98	0	774	32	8	11	47	1.70
192462--192507	20	2.3	20	92	7	76	32	19	15	32	1.93
193978--194020	21	2.2	20	83	8	52	34	9	6	48	1.62
195606--195991	182	2.1	184	88	2	573	44	7	3	44	1.49
197779--197839	32	1.9	32	90	6	97	45	0	6	47	1.28
205929--205983	27	1.9	30	85	10	80	23	16	9	50	1.73
209172--209758	238	2.4	241	83	11	748	27	10	18	42	1.84
210053--210101	18	2.8	17	78	3	53	28	24	8	38	1.84
212021--212047	13	2.1	13	100	0	54	22	25	14	37	1.93
218808--218839	16	2.1	15	94	5	55	46	6	9	37	1.61
220128--220186	30	2.0	29	83	6	75	54	11	0	33	1.37
233024--233056	7	4.7	7	92	0	57	15	0	39	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233367--233486	61	2.0	60	83	4	152	34	21	3	40	1.70
233663--233777	61	1.9	60	85	8	162	38	5	22	33	1.77
235690--235750	19	3.3	19	70	25	67	4	14	29	50	1.64
235694--235755	18	3.4	18	74	24	67	6	14	29	50	1.68
235883--235917	12	2.9	12	91	0	61	48	31	17	2	1.61
239238--239276	5	7.8	5	88	0	60	25	0	17	56	1.41
239238--239276	15	2.6	15	100	0	78	25	0	17	56	1.41
241234--241285	26	2.0	26	85	3	70	40	7	9	42	1.66
246016--246052	13	2.7	15	84	16	53	67	2	5	24	1.25
247205--247922	105	6.9	105	94	1	1182	22	17	26	33	1.96
247205--247922	207	3.4	208	92	2	1174	22	17	26	33	1.96
247206--247922	312	2.3	313	92	2	1176	22	17	26	33	1.96
248338--248690	65	5.2	66	75	9	237	37	11	20	30	1.88
248506--248624	36	3.3	36	82	2	157	38	14	19	27	1.90
248513--248616	37	2.9	36	82	2	127	41	15	21	22	1.90
249124--249159	18	2.0	18	94	0	63	41	33	8	16	1.78
249596--249639	22	2.0	22	91	8	72	27	11	22	38	1.88
250240--250294	19	3.0	18	78	17	60	0	14	7	78	0.96
250238--250294	26	2.3	26	80	17	68	0	15	7	77	0.98
250245--250306	17	3.5	17	78	10	61	1	16	6	75	1.08
250245--250306	18	3.5	17	78	8	52	1	16	6	75	1.08
253433--253478	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253975--254012	14	2.7	15	84	12	53	68	2	5	23	1.23
256115--256161	21	2.3	21	81	3	60	59	4	0	36	1.17
256318--256680	157	2.3	153	82	9	446	52	5	14	27	1.64
256497--256570	38	1.9	38	81	10	89	62	1	13	22	1.39
263752--263838	27	3.3	26	74	9	86	62	1	11	25	1.36
263827--263869	17	2.5	17	88	3	59	69	6	0	23	1.12
263983--264233	138	1.8	137	88	5	393	57	5	8	28	1.51
265820--266383	105	5.4	105	97	0	1038	22	18	25	33	1.97
276669--276702	10	3.4	10	87	0	50	73	0	5	20	1.04
277672--277758	27	3.3	26	74	9	86	62	1	11	25	1.36
278176--278255	2	42.0	2	79	9	69	57	1	1	40	1.15
277926--278174	138	1.8	136	90	4	396	57	5	8	28	1.51
280220--280294	21	3.6	21	81	0	87	25	24	18	32	1.97
280288--280348	21	2.9	21	87	0	86	21	24	22	31	1.98
281028--281141	21	5.4	21	93	0	183	31	23	23	21	1.98
281133--281189	21	2.7	21	83	0	78	28	19	22	29	1.98
284366--284390	13	1.9	13	100	0	50	12	56	32	0	1.36
291127--291164	20	2.0	20	90	10	62	44	10	26	18	1.82
293786--293839	22	2.5	22	96	0	99	46	0	12	40	1.42
296693--296726	16	2.1	16	100	0	68	52	17	17	11	1.73
298577--298621	22	2.0	22	84	16	58	71	4	8	15	1.28
301545--301676	59	2.2	59	84	7	162	37	13	10	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302816--302877	16	3.9	16	72	8	56	17	12	29	40	1.87
309888--309991	23	4.4	24	82	1	104	10	12	19	57	1.63
309856--309953	10	9.2	10	68	24	58	12	11	19	57	1.65
316356--316393	20	2.0	20	84	5	51	71	0	2	26	1.00
328253--328363	33	3.3	33	88	2	168	26	14	39	19	1.90
328264--328364	34	3.0	34	92	1	168	24	14	39	20	1.91
331796--331839	22	2.0	21	86	4	61	52	11	6	29	1.63
332085--332113	2	15.0	2	92	7	51	51	0	0	48	1.00
332703--332729	14	1.9	14	100	0	54	33	0	14	51	1.43
332958--333044	36	2.4	37	90	5	133	13	26	10	49	1.74
336924--337015	35	2.6	35	91	0	139	36	28	14	20	1.91
337281--337312	6	5.3	6	96	0	55	37	0	46	15	1.46
338925--338988	25	2.6	25	97	0	119	32	15	17	34	1.91
339518--339646	60	2.2	59	80	2	141	36	16	12	34	1.86
346212--346294	41	2.0	41	95	0	148	34	18	25	21	1.96
352412--352565	36	4.2	37	90	4	240	36	37	12	14	1.83
353700--353734	2	17.5	2	100	0	70	48	0	0	51	1.00
353993--354029	19	1.9	19	94	0	65	40	5	27	27	1.78
354443--354495	20	2.7	20	96	0	97	22	20	28	28	1.99
354611--354647	19	1.9	19	88	0	56	24	16	27	32	1.96
354976--355006	16	1.9	16	93	0	53	41	0	6	51	1.27
355311--355375	18	3.7	18	70	15	55	50	3	3	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355352--355394	14	3.1	14	80	9	52	51	2	2	44	1.27
356911--356969	29	2.1	29	87	3	84	45	8	5	40	1.56
357035--357078	16	2.8	16	85	0	70	40	9	11	38	1.73
357361--357453	29	3.2	29	78	11	93	46	6	4	43	1.49
357364--357468	29	3.4	30	79	9	88	45	5	3	44	1.45
363111--363199	43	2.1	43	100	0	178	37	23	2	37	1.68
370471--370599	24	5.4	24	85	3	154	27	19	39	13	1.89
370471--370599	48	2.7	48	84	4	179	27	19	39	13	1.89
370663--370718	24	2.3	24	76	11	60	28	23	30	17	1.97
370754--370946	24	8.0	23	92	1	233	22	22	39	14	1.91
370774--370957	24	7.7	24	92	1	239	22	22	41	13	1.88
373764--373825	28	2.1	30	79	5	74	62	4	9	22	1.44
374211--374277	33	2.0	33	91	5	109	41	13	13	31	1.83
374077--374411	167	2.0	167	89	1	519	40	16	12	29	1.86
374244--374884	134	4.8	134	98	0	1201	39	17	13	29	1.88
377816--377841	11	2.4	11	100	0	52	38	0	0	61	0.96
378723--378778	19	2.7	21	78	10	71	50	0	3	46	1.19
385792--385836	21	2.2	21	84	4	56	62	4	2	31	1.27
387148--387232	33	2.6	32	90	5	143	10	10	37	41	1.74
387372--387459	37	2.4	37	94	1	149	10	10	39	39	1.73
387876--387909	10	3.5	10	84	8	52	70	5	2	20	1.21
387981--388058	38	2.1	38	97	0	147	35	23	16	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388046--388095	18	2.9	18	91	5	77	28	30	6	36	1.81
392942--392971	2	15.0	2	100	0	60	50	0	0	50	1.00
396735--396792	26	2.1	28	84	12	77	55	1	0	43	1.10
413552--413841	143	2.0	143	90	0	454	31	14	20	33	1.92
438096--438166	34	2.1	34	97	0	133	28	14	28	29	1.95
455626--455783	21	7.8	20	72	7	86	38	24	17	18	1.93
455751--455960	20	10.5	20	80	5	210	36	26	18	18	1.94
457973--458090	19	6.7	19	74	20	121	44	17	22	15	1.86
457959--458066	33	3.2	33	94	1	189	46	18	22	12	1.83
457989--458046	14	3.8	14	73	20	53	46	18	22	12	1.82

Tables:   1   2   3   4   5   6   7   8