genome.fa.s8071.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008071.1 Hibiscus syriacus cultivar Beakdansim tig00110569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1969971

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 922 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1817971--1818021	25	2.0	25	92	0	84	43	13	17	25	1.86
1823170--1823472	149	2.0	148	90	0	480	25	15	22	35	1.94
1823444--1823495	23	2.3	23	83	6	72	25	21	25	28	1.99
1823669--1823729	21	2.9	21	80	4	61	49	1	18	31	1.57
1823671--1823736	33	2.0	33	82	5	80	50	1	16	31	1.55
1824281--1824359	20	3.8	21	76	14	74	31	17	21	29	1.96
1838110--1838193	44	1.9	44	85	0	114	30	14	19	35	1.91
1840618--1840674	23	2.5	23	85	0	69	54	5	0	40	1.23
1848086--1848171	36	2.4	36	80	0	109	19	16	39	24	1.91
1849350--1849502	60	2.5	59	83	7	173	45	3	15	35	1.64
1849412--1849730	157	2.0	157	94	1	559	44	9	10	35	1.71
1850037--1850061	2	12.5	2	100	0	50	52	0	0	48	1.00
1854187--1854245	31	1.9	31	96	0	109	44	5	3	47	1.42
1856286--1856356	31	2.3	31	78	7	83	53	9	9	26	1.65
1864254--1864284	15	2.1	15	100	0	62	54	6	12	25	1.62
1870152--1870198	19	2.3	20	85	7	60	42	0	2	55	1.12
1874986--1875019	17	2.0	17	100	0	68	23	29	17	29	1.97
1876055--1876125	31	2.3	31	78	7	83	53	9	9	26	1.65
1883056--1883114	7	8.6	7	98	1	111	27	13	44	15	1.84
1890101--1890134	17	2.0	17	88	0	50	52	0	0	47	1.00
1896909--1897063	21	7.8	20	71	9	77	38	25	17	18	1.93
1897033--1897279	20	12.5	20	82	5	254	36	25	19	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1897954--1897998	22	2.0	23	86	8	65	24	13	22	40	1.90
1898173--1898197	12	2.1	12	100	0	50	72	0	28	0	0.86
1900508--1900605	19	5.4	19	84	13	143	14	22	17	45	1.84
1900489--1900605	53	2.2	53	98	1	227	13	23	17	44	1.85
1900664--1900754	33	2.8	33	96	3	166	43	18	24	13	1.85
1900664--1900809	19	8.6	19	70	24	112	42	18	23	15	1.88
1900696--1900809	51	2.2	51	92	3	185	42	18	21	16	1.88
1900816--1900913	19	5.5	19	81	16	129	15	23	17	43	1.87
1900781--1900913	51	2.6	51	87	5	144	18	24	17	39	1.91
1901018--1901054	14	2.6	14	91	0	65	45	21	0	32	1.52
1902969--1903033	18	3.4	19	83	10	80	44	27	16	10	1.81
1902969--1903102	19	7.6	19	75	18	119	45	23	18	11	1.83
1902969--1903097	33	3.8	33	86	5	159	46	24	17	11	1.81
1903024--1903080	14	3.7	14	75	20	51	45	22	19	12	1.83
1903098--1903207	19	6.3	18	69	20	74	10	17	28	44	1.80
1903098--1903189	33	2.8	33	90	3	141	8	18	28	44	1.79
1903248--1903629	93	4.1	93	98	0	737	46	18	12	22	1.83
1903634--1903683	18	2.8	18	100	0	100	42	10	20	28	1.84
1905346--1905435	14	5.7	14	74	23	81	42	23	25	8	1.83
1905338--1905452	33	3.5	33	93	0	203	46	20	23	9	1.80
1905345--1905457	19	6.8	18	71	23	79	44	22	23	9	1.82
1905453--1905538	39	2.4	37	84	11	108	10	22	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1905476--1905529	19	2.8	20	80	5	65	12	25	20	40	1.88
1905476--1905550	20	3.8	20	78	5	89	13	24	18	44	1.85
1905630--1905700	33	2.2	33	94	0	124	47	16	23	11	1.79
1905882--1905936	22	2.5	22	81	0	74	20	16	40	23	1.91
1906081--1906274	20	9.6	20	82	5	221	19	19	25	35	1.95
1906081--1906274	60	3.2	60	83	0	253	19	19	25	35	1.95
1906261--1906343	21	4.0	21	73	6	78	25	16	24	33	1.96
1906241--1906339	42	2.4	43	77	11	100	21	18	23	37	1.94
1906883--1906933	19	2.6	20	90	3	77	43	23	17	15	1.88
1906920--1906973	20	2.7	20	94	0	90	51	18	18	11	1.74
1907008--1907215	20	10.4	20	97	0	389	35	15	24	24	1.94
1907320--1907351	6	5.5	6	96	3	57	31	53	15	0	1.43
1908039--1908120	6	14.5	6	98	1	129	0	17	53	29	1.44
1908198--1908241	20	2.2	20	91	0	70	11	18	15	54	1.70
1908228--1908524	20	14.6	20	78	7	195	19	22	18	40	1.92
1908230--1908443	40	5.2	40	82	5	230	21	23	17	37	1.93
1908238--1908448	103	2.0	105	89	2	327	20	24	16	38	1.93
1908230--1908441	83	2.6	83	86	2	277	21	24	17	37	1.94
1908210--1908505	83	3.6	83	78	3	251	19	22	17	41	1.90
1924994--1925049	20	2.8	20	76	10	60	26	21	19	32	1.97
1935611--1935699	19	4.3	20	75	17	92	38	4	25	31	1.76
1937844--1937882	19	2.1	19	85	0	51	64	2	0	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1946122--1946398	150	1.8	150	88	3	423	28	20	18	31	1.96
1946118--1946440	150	2.2	149	80	6	391	28	22	17	31	1.97
1950065--1950174	20	5.4	20	68	20	84	19	24	25	30	1.98
1950056--1950216	41	3.9	41	98	0	304	19	23	26	30	1.98
1951017--1951376	21	17.4	21	68	17	134	29	25	23	21	1.99
1951018--1951394	41	9.1	41	88	6	253	29	25	23	21	1.99
1951059--1951191	62	2.1	62	100	0	266	32	23	24	20	1.98
1951017--1951342	103	3.1	103	92	3	523	29	25	23	21	1.99
1951184--1951315	62	2.1	62	95	0	246	25	29	24	20	1.99
1951039--1951358	62	5.2	60	80	11	178	29	26	23	20	1.99
1956775--1956799	4	6.2	4	100	0	50	76	0	24	0	0.80
1963043--1963137	49	2.0	48	95	2	172	45	15	18	20	1.86
1965544--1965680	20	7.2	20	69	14	101	46	13	5	33	1.68
1965543--1965630	41	2.2	41	91	2	151	48	12	5	32	1.64
1965581--1965681	52	1.9	53	95	2	186	47	13	5	32	1.67
1968006--1968034	14	2.1	14	100	0	58	41	31	0	27	1.56

Tables:   1   2   3   4   5   6   7   8

The End!