genome.fa.s8071.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008071.1 Hibiscus syriacus cultivar Beakdansim tig00110569_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1969971

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 922 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458061--458176	53	2.2	52	86	3	160	18	23	18	38	1.93
458099--458186	19	4.8	19	82	14	123	13	22	15	47	1.81
458277--458313	14	2.6	14	91	0	65	45	21	0	32	1.52
460237--460356	19	6.6	19	77	12	126	45	23	20	10	1.82
460253--460351	33	2.9	33	90	6	144	48	22	20	9	1.77
460368--460426	14	3.9	14	76	20	64	6	16	28	47	1.72
460352--460475	33	3.7	33	91	1	185	8	17	27	45	1.78
460352--460443	19	5.4	18	72	24	83	7	17	28	46	1.75
460401--460457	14	3.7	14	72	20	51	8	22	24	43	1.81
460573--461074	93	5.4	93	99	0	977	45	19	12	22	1.84
462757--462879	33	3.5	33	90	8	156	46	17	24	11	1.81
462757--462821	21	3.1	21	77	4	87	47	13	26	12	1.78
462806--462862	14	3.7	14	75	20	60	43	22	24	8	1.81
462798--462879	33	2.5	33	100	0	164	47	19	23	9	1.79
462896--462952	14	3.7	14	75	20	60	8	24	22	43	1.81
462880--462959	33	2.4	33	95	0	142	8	21	22	47	1.78
462940--463013	21	3.5	21	80	7	96	14	20	17	47	1.83
463093--463163	33	2.2	33	94	0	124	47	16	23	11	1.79
463543--463674	20	6.6	20	89	3	185	17	19	28	34	1.95
463874--463902	1	29.0	1	100	0	58	0	0	0	100	0.00
464169--464215	21	2.3	21	82	17	55	44	6	0	48	1.28
464897--464922	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472316--472372	25	2.2	25	81	3	69	47	0	5	47	1.24
482450--482489	22	1.9	21	85	10	55	55	2	2	40	1.27
489722--489750	14	2.1	14	100	0	58	37	6	0	55	1.27
498481--499199	105	6.8	105	97	0	1280	22	18	25	32	1.97
499948--500102	57	2.8	57	86	5	187	14	22	14	49	1.79
500004--500105	51	2.0	51	98	0	195	14	23	14	47	1.82
506636--506684	20	2.3	22	75	13	57	16	20	2	61	1.44
506761--506838	39	2.0	39	82	5	95	16	25	28	29	1.97
511138--511174	2	18.5	2	100	0	74	51	0	0	48	1.00
516426--516497	22	3.3	22	86	3	101	25	26	20	27	1.99
517293--517341	25	2.0	23	81	14	55	32	2	18	46	1.60
523316--523387	22	3.3	22	86	3	101	25	26	20	27	1.99
527261--527415	60	2.6	59	78	9	145	45	5	18	30	1.73
530659--530778	64	1.9	64	80	3	143	35	20	18	26	1.95
531713--531836	62	2.0	63	84	4	162	29	18	20	31	1.96
531710--531837	31	4.1	31	75	8	125	28	17	20	32	1.96
531985--532077	35	2.6	36	80	13	95	32	0	20	47	1.51
549984--550020	6	6.2	6	100	0	74	48	0	51	0	1.00
550130--550171	6	7.0	6	88	0	66	78	0	0	21	0.75
550172--550205	6	5.8	6	96	3	61	70	29	0	0	0.87
554333--554366	15	2.3	15	100	0	68	26	14	20	38	1.91
557217--557249	16	2.1	16	100	0	66	57	18	0	24	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557306--557411	9	12.9	8	72	18	67	59	0	0	40	0.97
557314--557399	7	11.7	7	68	17	50	61	0	0	38	0.96
557305--557412	34	3.3	34	96	3	195	58	0	0	41	0.98
560965--561008	6	7.3	6	94	0	79	31	13	36	18	1.90
560961--561008	18	2.7	18	93	0	87	33	12	33	20	1.90
562073--562097	3	8.3	3	100	0	50	68	32	0	0	0.90
562447--562477	15	2.0	15	93	6	53	19	0	29	51	1.47
562634--562673	2	20.0	2	100	0	80	50	0	0	50	1.00
563858--563894	3	12.3	3	100	0	74	32	0	0	67	0.91
564479--564515	18	2.1	18	100	0	74	10	0	32	56	1.34
564684--564819	21	6.5	21	79	8	143	31	23	22	22	1.98
564705--564839	41	3.3	41	69	20	102	30	22	21	25	1.99
564809--564860	20	2.6	20	96	0	95	25	21	17	36	1.94
564848--564942	21	4.6	21	78	10	106	21	21	25	32	1.98
564809--564945	61	2.2	61	80	12	165	23	20	21	34	1.97
564875--564967	40	2.3	42	88	7	138	21	20	22	35	1.96
564896--564963	21	3.3	20	71	16	68	20	19	22	38	1.94
564854--564971	61	1.9	60	80	10	132	23	20	22	33	1.97
564905--564971	21	3.3	19	73	15	71	25	20	20	32	1.97
565583--565641	6	10.6	5	94	1	55	1	18	52	27	1.55
565591--565645	6	9.5	6	98	2	96	0	16	52	30	1.44
565738--565863	21	5.8	21	77	12	130	38	20	19	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565731--565872	42	3.3	42	87	3	221	37	21	19	21	1.95
565738--565878	21	6.6	21	77	12	112	38	21	19	20	1.94
569100--569125	4	6.5	4	100	0	52	76	0	0	23	0.78
569632--569661	3	10.0	3	92	0	51	3	33	30	33	1.74
576526--576581	27	2.1	28	87	12	82	39	1	5	53	1.34
580917--580970	20	2.7	20	97	0	99	25	25	12	35	1.92
581036--581062	5	5.4	5	100	0	54	44	37	18	0	1.50
581195--581221	5	5.4	5	100	0	54	44	37	18	0	1.50
581574--581611	16	2.4	16	95	0	67	0	42	0	57	0.98
584864--584902	15	2.4	16	83	12	53	51	0	0	48	1.00
585058--585095	20	1.9	20	88	0	58	21	26	10	42	1.85
585897--586191	152	2.0	147	91	3	473	44	9	6	38	1.64
586349--586439	35	2.6	35	80	1	94	28	1	29	40	1.64
586374--586442	35	2.0	35	88	5	104	28	0	27	43	1.55
587908--587954	16	3.0	16	84	3	51	55	10	0	34	1.35
593428--593501	30	2.5	31	78	8	73	41	22	8	27	1.82
597502--597536	18	1.9	18	94	0	61	62	0	37	0	0.95
603268--603313	20	2.3	20	85	3	58	39	0	23	36	1.55
605080--605144	20	3.3	20	82	4	89	44	4	20	30	1.71
623367--623399	16	2.1	16	100	0	66	27	12	36	24	1.91
625639--625669	12	2.6	12	100	0	62	0	22	41	35	1.54
626897--627026	60	2.2	60	88	0	188	37	10	13	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627829--628198	185	2.0	183	92	2	607	45	7	3	42	1.51
631960--632069	58	1.9	58	100	0	220	35	14	14	35	1.87
633431--633476	24	1.9	24	86	8	67	45	6	10	36	1.65
635745--635783	12	3.2	12	88	3	60	43	0	0	56	0.99
635792--635849	23	2.6	23	94	5	102	44	12	3	39	1.58
643362--643533	85	2.0	85	98	0	335	31	29	19	19	1.96
651884--651998	31	3.7	30	83	6	117	43	3	2	50	1.33
656525--656573	19	2.6	18	76	20	55	34	6	2	57	1.35
663326--663367	19	2.2	20	82	4	50	35	7	9	47	1.64
663239--663415	98	1.8	98	91	0	291	37	15	7	39	1.75
665552--665589	2	19.5	2	94	5	69	47	0	0	52	1.00
667475--667549	35	2.1	35	85	4	98	30	0	25	44	1.55
667521--667577	28	2.0	28	83	6	71	28	0	24	47	1.52
667543--667589	21	2.2	21	88	0	67	19	0	29	51	1.47
667885--667949	11	5.6	11	72	22	53	26	26	23	24	2.00
667879--667950	23	3.1	23	83	2	99	25	26	23	25	2.00
669114--669151	17	2.2	18	85	4	51	50	2	0	47	1.15
669399--669456	29	2.0	29	96	0	107	27	10	12	50	1.72
669533--669784	128	2.0	128	93	0	432	33	17	16	32	1.93
670209--670238	15	2.0	15	100	0	60	0	26	40	33	1.57
670349--670437	43	2.0	45	82	8	112	48	1	1	49	1.16
670889--671026	60	2.3	60	84	9	167	36	13	14	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671795--671834	19	2.1	19	100	0	80	10	35	15	40	1.80
678925--679048	41	3.0	41	91	0	212	36	17	12	33	1.87
690232--690284	26	2.0	26	85	7	72	11	0	47	41	1.39
690744--690779	15	2.4	15	90	0	54	16	8	2	72	1.21
693638--693710	33	2.3	31	85	4	92	8	34	27	30	1.86
694737--694769	16	2.1	16	88	11	50	42	0	0	57	0.98
701719--701748	14	2.1	14	93	0	51	50	0	0	50	1.00
701906--701931	12	2.2	12	100	0	52	57	7	0	34	1.27
702766--702988	100	2.2	100	80	6	272	33	13	5	47	1.66
703756--703814	31	1.9	31	85	0	82	45	15	13	25	1.82

Tables:   1   2   3   4   5   6   7   8