genome.fa.s8076.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008076.1 Hibiscus syriacus cultivar Beakdansim tig00110578_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1136582

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256891--256940	24	2.0	24	88	3	73	56	0	2	42	1.11
259845--259869	2	12.5	2	100	0	50	48	0	0	52	1.00
261912--261938	3	9.0	3	100	0	54	33	0	0	66	0.92
262155--262208	28	2.0	28	86	10	78	46	1	14	37	1.56
262799--262843	23	2.0	23	86	0	63	60	0	4	35	1.17
262800--262855	23	2.4	23	78	3	58	58	1	3	35	1.26
264983--265024	20	2.1	20	90	0	66	28	30	9	30	1.89
265030--265074	20	2.2	20	84	0	54	24	24	20	31	1.98
265230--265282	22	2.4	22	84	6	63	18	45	18	16	1.86
265672--265722	20	2.5	21	83	6	68	17	7	19	54	1.67
267382--267431	21	2.4	21	86	0	73	22	14	30	34	1.93
267844--267997	21	7.3	21	76	11	86	24	34	14	27	1.94
267880--267978	42	2.4	42	73	13	96	24	32	15	28	1.95
269499--269570	20	3.6	20	81	7	74	13	11	23	51	1.73
269540--269577	20	1.9	20	88	0	58	18	15	21	44	1.86
278990--279043	24	2.2	24	93	0	90	40	20	18	20	1.91
278990--279057	24	2.8	24	84	0	64	38	20	17	23	1.93
279933--280110	20	8.9	20	76	10	114	33	12	24	29	1.92
280006--280110	41	2.6	39	77	8	111	31	14	25	28	1.95
280006--280174	82	2.1	80	82	5	198	30	13	26	30	1.93
281796--281854	25	2.3	25	94	2	100	40	8	18	32	1.81
287876--287936	31	2.0	31	90	0	95	49	1	3	45	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295992--296025	17	2.0	17	88	0	50	47	5	29	17	1.71
296898--296961	22	3.0	21	75	6	58	46	1	1	50	1.20
296991--297063	30	2.4	31	81	6	87	34	1	10	53	1.45
298143--298194	26	2.0	26	81	7	61	21	13	5	59	1.55
299672--299747	36	2.3	34	84	13	97	38	13	32	15	1.86
300214--300268	23	2.4	23	96	3	103	45	0	10	43	1.39
301482--301556	29	2.6	30	85	4	75	28	12	12	48	1.76
301500--301558	29	2.0	29	96	0	109	23	11	13	50	1.74
306155--306213	29	2.0	29	100	0	118	23	13	13	49	1.78
316562--316605	23	1.9	23	85	0	61	29	4	0	65	1.12
316702--316808	56	1.9	55	83	5	135	37	3	1	57	1.28
317567--317613	19	2.5	20	76	13	55	36	0	0	63	0.94
323628--323681	26	2.1	26	100	0	108	14	24	11	50	1.75
323632--323687	26	2.2	26	93	0	94	14	23	7	55	1.63
324742--324775	15	2.3	15	89	0	50	29	26	0	44	1.55
329506--329557	19	2.7	19	93	0	86	28	17	32	21	1.96
331032--331149	22	5.5	22	85	8	154	15	26	31	27	1.96
331032--331166	40	3.3	40	80	8	162	15	24	31	28	1.95
331032--331166	62	2.2	60	80	10	139	15	24	31	28	1.95
336269--336362	18	4.7	19	80	16	102	17	23	31	27	1.96
336269--336361	40	2.3	40	94	0	159	16	23	32	27	1.96
337888--337946	22	2.6	22	73	13	57	16	8	3	71	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339507--339581	20	3.3	22	74	14	64	26	0	8	65	1.20
339987--340091	25	4.0	25	72	16	104	51	5	10	32	1.60
340011--340126	55	2.1	55	98	0	223	49	6	11	32	1.65
340196--340220	13	1.9	13	100	0	50	68	0	0	32	0.90
349180--349253	36	2.0	37	84	7	98	50	4	0	45	1.20
350613--351146	221	2.4	216	88	7	762	35	27	12	24	1.92
351112--351183	37	1.9	38	97	2	137	40	37	8	13	1.75
350874--351413	259	2.1	254	92	3	897	36	29	12	22	1.90
353192--353405	21	10.2	21	90	6	328	30	25	21	23	1.99
353205--353472	42	6.5	41	82	12	216	30	23	21	25	1.99
353192--353405	104	2.0	105	89	6	310	30	25	21	23	1.99
353414--353487	21	3.6	21	75	17	82	22	20	25	31	1.98
353192--353431	83	2.9	83	91	4	378	30	24	21	23	1.99
353586--353618	6	5.5	6	100	0	66	33	51	15	0	1.43
354488--354578	42	2.2	42	88	4	130	39	24	15	20	1.91
361020--361047	2	14.0	2	100	0	56	50	0	0	50	1.00
362010--362041	2	16.0	2	100	0	64	50	0	50	0	1.00
366526--366564	18	2.1	18	85	4	51	46	0	0	53	1.00
368808--368835	2	14.0	2	100	0	56	50	0	0	50	1.00
368853--368915	14	4.1	16	73	21	53	66	3	1	28	1.16
370617--371289	211	3.2	210	94	1	1123	21	18	25	33	1.96
370617--371289	105	6.4	105	93	1	1123	21	18	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371507--371537	1	31.0	1	100	0	62	0	0	0	100	0.00
372067--372177	58	1.9	58	90	0	177	13	21	11	53	1.71
382641--382735	42	2.3	41	82	10	115	64	1	3	31	1.16
382677--382739	14	4.1	16	73	21	53	66	3	1	28	1.16
392198--392270	29	2.3	32	79	9	80	50	0	2	46	1.15
394904--394977	37	2.0	37	94	0	130	22	39	8	29	1.83
395510--395570	25	2.5	22	78	19	59	68	3	3	24	1.19
396372--396405	12	2.8	12	90	0	59	32	17	14	35	1.91
396551--396656	41	2.6	41	100	0	212	23	19	26	30	1.98
397207--397274	8	8.1	8	77	8	64	64	0	0	35	0.94
397209--397278	3	25.0	3	75	18	71	62	0	0	37	0.95
397229--397274	11	4.2	11	86	10	58	65	0	0	34	0.93
397210--397278	16	4.3	16	82	12	88	62	0	0	37	0.96
397447--397539	32	2.8	34	70	11	102	23	13	25	36	1.92
397443--398548	124	8.9	124	87	2	1591	26	17	24	31	1.97
397442--398529	369	2.9	368	88	2	1612	25	17	24	31	1.97
401464--401507	16	2.8	16	100	0	88	29	40	6	22	1.80
402461--402531	25	2.8	25	72	19	67	69	0	4	26	1.07
403634--403689	8	6.8	8	76	13	51	67	0	0	32	0.91
403643--403689	13	3.4	14	85	11	62	68	0	0	31	0.90
403636--403689	3	19.3	3	75	21	55	66	0	0	33	0.92
403724--403748	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403822--403853	3	10.7	3	100	0	64	65	0	0	34	0.93
404973--404999	3	9.0	3	100	0	54	33	33	0	33	1.58
410570--410607	2	19.0	2	100	0	76	50	0	0	50	1.00
422407--422461	19	2.9	19	74	15	60	65	1	7	25	1.28
422545--422678	22	6.0	21	72	18	74	67	0	3	29	1.08
422622--422712	3	30.0	3	74	18	50	64	2	2	30	1.17
422760--422811	14	3.4	14	78	17	59	69	1	7	21	1.24
423342--423433	37	2.5	37	81	0	103	31	16	13	39	1.86
424196--425330	106	10.7	106	92	0	1777	22	18	25	34	1.96
424196--426192	212	9.5	212	89	2	2931	22	17	24	34	1.96
424196--426192	318	6.3	318	90	2	2998	22	17	24	34	1.96
425243--425417	87	2.0	87	93	0	296	22	18	25	33	1.97
425330--426192	106	8.2	106	90	0	1300	22	17	24	35	1.95
425330--426192	211	4.1	212	89	0	1300	22	17	24	35	1.95
425330--426192	317	2.7	317	91	0	1377	22	17	24	35	1.95
427771--427844	33	2.2	34	79	15	84	1	10	8	79	0.99
427805--427847	15	2.8	16	79	17	54	0	9	6	83	0.80
427804--427848	18	2.5	17	82	13	54	0	8	6	84	0.78
432141--432196	20	2.8	20	77	17	64	66	1	7	25	1.27
432274--432352	21	3.7	19	75	18	68	72	1	2	24	1.05
432310--432347	13	3.0	13	85	14	53	71	0	0	28	0.87
432283--432351	22	3.2	22	74	20	65	72	0	2	24	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432297--432351	23	2.3	23	85	14	69	72	0	1	25	0.94
432547--432575	2	14.5	2	100	0	58	51	0	0	48	1.00
433072--433169	37	2.6	37	85	0	124	33	13	13	39	1.83
436999--437029	16	1.9	16	93	0	53	6	32	6	54	1.51
440129--440175	16	2.9	16	93	0	76	6	34	4	55	1.45
440108--440175	8	8.5	8	68	12	50	10	30	2	55	1.48
440661--440701	22	1.9	21	90	5	64	70	4	0	24	1.06
440898--440925	14	2.0	14	100	0	56	50	7	0	42	1.30
446463--446535	37	2.0	37	97	0	137	41	19	28	10	1.85
449258--449339	28	2.9	28	83	3	103	30	7	26	35	1.84

Tables:   1   2   3   4   5   6