genome.fa.s8076.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008076.1 Hibiscus syriacus cultivar Beakdansim tig00110578_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1136582

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 647 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000199--1000354	75	2.1	76	98	1	305	37	1	6	54	1.34
1012565--1012618	20	2.7	20	77	11	74	27	29	14	27	1.95
1012626--1012689	21	3.1	21	84	2	76	26	25	17	31	1.97
1012663--1012732	19	3.6	20	79	9	65	38	22	12	25	1.90
1012691--1012751	18	3.3	18	81	6	59	34	19	14	31	1.92
1013471--1013504	12	2.8	12	90	0	50	55	29	0	14	1.40
1013630--1013683	24	2.2	24	90	0	81	22	18	18	40	1.91
1015946--1015986	18	2.3	18	91	0	64	53	26	2	17	1.56
1016430--1016479	25	2.0	25	96	0	91	26	8	22	44	1.80
1017087--1017162	35	2.2	35	83	4	100	36	23	13	26	1.91
1017154--1017240	39	2.2	39	93	0	156	45	21	14	17	1.84
1017415--1017454	20	2.0	20	90	0	62	40	20	20	20	1.92
1020871--1020921	22	2.3	22	89	0	75	25	13	39	21	1.90
1021035--1021093	20	2.9	20	79	2	64	28	16	13	40	1.87
1021086--1021125	21	1.9	21	100	0	80	40	17	22	20	1.92
1021138--1021191	20	2.7	20	75	11	65	27	14	29	27	1.95
1021281--1021323	22	2.0	22	85	0	59	39	2	4	53	1.34
1030811--1030862	17	3.2	17	75	10	54	32	1	13	51	1.52
1032912--1032952	19	2.1	19	86	4	55	65	0	7	26	1.18
1034279--1034346	2	33.5	2	97	2	127	50	1	0	48	1.10
1034625--1035399	105	7.4	105	98	0	1487	23	18	24	32	1.97
1036143--1036234	47	1.9	48	86	2	132	16	23	14	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045629--1045653	10	2.5	10	100	0	50	72	0	8	20	1.10
1046975--1047015	19	2.0	21	86	9	59	63	0	7	29	1.21
1048343--1048372	2	14.5	2	93	6	51	50	3	0	46	1.18
1049693--1049729	19	2.0	18	89	5	56	45	0	0	54	1.00
1058875--1058992	48	2.5	48	88	0	182	36	31	17	14	1.90
1060566--1060893	163	2.0	163	94	5	583	37	6	7	48	1.57
1077430--1077882	224	2.0	224	98	0	870	33	21	18	26	1.96
1079534--1079573	21	1.9	21	94	0	71	30	15	7	47	1.72
1079568--1079658	33	2.8	32	91	5	146	34	6	15	43	1.72
1079677--1079706	13	2.3	13	94	0	51	40	3	10	46	1.54
1079902--1079958	21	2.7	21	91	0	96	19	26	26	28	1.99
1080127--1080165	15	2.6	15	87	0	60	28	12	12	46	1.79
1080256--1080287	16	2.0	17	88	11	50	43	21	21	12	1.86
1085930--1086013	34	2.5	33	86	3	96	36	23	4	34	1.76
1087749--1087774	2	13.0	2	100	0	52	50	0	0	50	1.00
1093592--1093700	57	1.9	58	92	5	186	34	22	4	38	1.74
1093592--1093700	29	3.8	29	91	4	177	34	22	4	38	1.74
1094270--1094363	31	3.0	31	98	0	179	28	29	9	31	1.89
1098850--1099046	29	6.8	29	95	3	353	34	20	6	39	1.77
1098850--1099046	59	3.4	59	97	2	364	34	20	6	39	1.77
1098850--1099046	88	2.3	87	95	3	353	34	20	6	39	1.77
1118944--1118976	5	6.6	5	96	0	57	78	18	3	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126537--1126566	3	10.0	3	100	0	60	33	0	0	66	0.92
1128880--1129008	63	2.0	63	100	0	258	25	19	18	36	1.94
1130043--1130241	70	2.8	71	94	2	341	32	31	3	32	1.75

Tables:   1   2   3   4   5   6

The End!