genome.fa.s8092.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008092.1 Hibiscus syriacus cultivar Beakdansim tig00110607_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2324158

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1399 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2179806--2179888	21	4.0	21	71	18	66	61	2	4	31	1.30
2179800--2179905	43	2.4	42	83	12	133	60	2	3	33	1.29
2180067--2180125	19	3.0	20	76	16	68	45	0	0	54	0.99
2181609--2181655	20	2.3	20	92	0	76	21	19	27	31	1.97
2181642--2181775	20	6.7	20	84	1	169	21	19	18	40	1.92
2181772--2181859	21	4.2	21	95	0	149	35	18	28	18	1.94
2185826--2185888	32	1.9	34	84	12	87	57	0	3	39	1.15
2186177--2186206	15	2.0	15	93	0	51	53	6	3	36	1.44
2187388--2187465	19	4.1	20	78	18	69	50	0	1	48	1.09
2187411--2187479	34	2.0	36	84	15	94	53	0	0	46	1.00
2187621--2188330	76	9.4	76	95	1	1275	34	23	19	23	1.96
2187621--2188330	151	4.7	152	95	1	1275	34	23	19	23	1.96
2188331--2188658	166	2.0	166	88	6	493	38	11	14	36	1.82
2188901--2189274	187	2.0	187	100	0	748	24	18	17	40	1.91
2191691--2191753	31	2.0	31	96	0	117	33	15	17	33	1.92
2199372--2199401	15	2.0	15	93	0	51	53	6	3	36	1.44
2200608--2200679	3	24.0	3	77	5	74	58	0	0	41	0.98
2200617--2200679	18	3.6	17	87	12	92	57	0	0	42	0.99
2214189--2214360	6	28.5	6	69	16	63	75	2	5	16	1.11
2214239--2214291	9	5.7	9	81	16	54	81	1	7	9	0.96
2214182--2214291	20	5.4	20	70	23	70	77	1	8	12	1.07
2214193--2214289	35	2.7	35	75	16	90	78	2	8	11	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2214294--2214357	3	22.3	3	74	15	55	71	1	3	23	1.08
2214365--2214398	17	2.0	17	88	11	52	76	0	0	23	0.79
2215409--2215443	14	2.5	14	90	0	61	60	2	0	37	1.12
2215504--2215638	39	3.6	39	77	11	131	49	4	4	41	1.43
2215642--2215786	34	4.0	34	80	15	159	40	6	4	48	1.47
2216327--2216355	12	2.5	12	94	5	51	24	24	20	31	1.98
2216480--2216547	35	1.9	35	96	0	127	41	11	17	29	1.85
2216925--2216960	18	2.1	18	89	5	56	25	5	2	66	1.27
2217023--2217047	2	12.5	2	100	0	50	48	0	0	52	1.00
2217224--2217248	2	12.5	2	100	0	50	48	0	0	52	1.00
2217454--2217533	40	2.0	40	86	9	112	31	5	7	56	1.49
2217596--2217628	13	2.4	14	90	5	50	18	6	0	75	1.00
2225902--2226775	106	8.3	106	85	5	1071	33	23	18	23	1.97
2225933--2226725	411	1.9	414	87	2	1164	34	23	18	23	1.96
2226028--2226632	305	2.0	306	91	1	980	35	22	18	23	1.96
2227260--2227331	35	2.1	35	100	0	144	40	11	20	27	1.87
2227752--2227778	2	13.5	2	100	0	54	51	0	0	48	1.00
2227818--2227842	2	12.5	2	100	0	50	48	0	0	52	1.00
2228256--2228335	40	2.0	40	86	9	112	33	5	5	56	1.43
2231838--2231888	19	2.7	18	82	14	66	29	0	0	70	0.87
2231839--2231869	14	2.1	15	94	5	55	29	0	0	70	0.87
2231840--2231885	23	2.0	22	87	4	65	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2237561--2237870	64	4.8	64	90	1	467	37	20	12	29	1.89
2237873--2238466	121	4.9	121	87	1	812	34	26	15	23	1.95
2238524--2238816	86	3.4	85	86	1	370	36	20	17	25	1.95
2238522--2238844	171	1.9	171	81	5	393	35	20	17	26	1.95
2245832--2245933	51	2.0	51	98	0	195	32	15	15	36	1.90
2248840--2248900	26	2.3	26	88	2	95	1	18	27	52	1.54
2256519--2256605	37	2.4	36	84	7	104	31	19	20	28	1.97
2256586--2256634	19	2.6	19	84	9	57	24	28	20	26	1.99
2262082--2262157	23	3.5	21	75	12	55	26	23	23	26	2.00
2262081--2262180	43	2.3	42	78	8	103	28	25	24	23	2.00
2263695--2263738	21	2.1	21	82	0	52	9	38	15	36	1.80
2264716--2264923	65	3.2	63	81	11	226	30	23	18	27	1.97
2264895--2264943	19	2.6	19	84	9	57	24	28	20	26	1.99
2267721--2267757	2	18.5	2	100	0	74	48	0	0	51	1.00
2271675--2271723	19	2.6	19	93	0	80	48	22	26	2	1.61
2272563--2272617	28	2.0	28	92	0	92	34	5	23	36	1.78
2273561--2273604	19	2.3	19	96	0	79	22	6	38	31	1.81
2275030--2275071	18	2.3	18	91	0	66	38	16	11	33	1.86
2286068--2286099	15	2.1	16	94	5	57	6	25	18	50	1.70
2286849--2286882	16	2.1	16	94	0	59	32	26	8	32	1.87
2289992--2290203	106	2.0	106	93	0	361	42	8	15	33	1.76
2291813--2291876	34	1.9	33	84	9	85	26	17	17	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2291758--2292143	191	2.0	191	97	1	727	36	11	14	38	1.82
2293226--2293268	19	2.3	19	88	8	61	41	18	4	34	1.71
2293238--2293386	19	7.5	19	76	8	136	40	22	7	30	1.81
2293236--2293386	43	3.7	42	74	15	122	39	22	7	30	1.81
2293226--2293386	39	4.1	38	77	8	151	39	21	7	31	1.81
2293357--2293581	113	2.0	113	98	0	432	30	9	8	51	1.64
2299374--2299435	33	2.1	29	82	17	74	25	14	17	41	1.88
2299381--2299446	33	2.0	33	93	0	114	25	13	19	40	1.89
2305277--2305351	23	3.3	23	98	0	141	44	20	13	22	1.86
2305315--2305395	34	2.4	34	89	0	117	45	17	14	22	1.84
2305372--2305418	22	2.1	22	88	0	67	46	10	17	25	1.79
2307154--2307244	31	2.9	32	83	9	107	32	20	19	26	1.97
2314772--2314842	35	2.0	36	97	2	135	16	8	11	63	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!