genome.fa.s8099.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008099.1 Hibiscus syriacus cultivar Beakdansim tig00110627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  767286

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200631--201483	180	4.7	183	87	3	1091	27	14	13	43	1.83
200631--201499	362	2.4	365	84	5	1143	27	14	13	44	1.83
202885--202933	25	2.0	25	84	8	64	73	8	6	12	1.24
203136--203190	15	3.7	15	76	11	51	74	0	3	21	0.97
203154--203253	19	5.0	21	73	19	88	66	1	4	29	1.17
203137--203253	39	2.9	40	85	9	116	68	0	4	26	1.14
203169--203253	18	4.6	17	72	17	71	65	1	3	29	1.16
203288--203393	14	7.6	15	71	19	54	64	0	4	31	1.14
203299--203336	20	1.9	19	89	5	58	65	0	2	31	1.06
203292--203375	27	3.0	27	81	10	98	65	0	5	28	1.16
203891--203928	19	2.0	20	89	5	60	2	28	7	60	1.38
205708--206012	36	8.8	36	72	16	205	39	13	19	28	1.89
205717--205809	37	2.6	36	87	1	123	43	16	21	19	1.88
205740--206018	101	2.8	101	84	2	335	39	12	18	29	1.87
205947--206018	37	1.9	37	88	0	108	38	13	20	26	1.90
207629--207694	27	2.5	27	76	14	66	6	15	4	74	1.18
207649--207693	13	3.3	14	81	12	58	2	15	4	77	1.02
207668--207701	17	1.9	18	94	5	61	2	17	2	76	1.04
210790--210852	22	2.7	23	75	17	67	77	6	1	14	1.03
210814--210863	11	4.6	11	83	11	59	76	6	0	18	0.99
210814--210873	21	2.8	22	76	16	63	76	6	0	16	0.99
210811--210892	19	4.8	17	70	20	55	75	4	2	17	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211092--211182	41	2.3	40	81	7	98	63	2	5	28	1.28
211054--211176	41	3.5	33	68	22	90	66	1	5	26	1.23
211236--211294	4	14.2	4	82	10	66	69	0	3	27	1.04
211231--211306	28	2.8	26	83	14	93	69	0	2	27	1.01
219110--219169	23	2.7	23	81	2	68	26	25	28	20	1.99
219574--219644	23	3.1	23	79	0	79	29	22	25	22	1.99
221031--221086	24	2.3	24	100	0	112	37	16	17	28	1.91
223957--223991	18	1.9	18	94	0	61	20	20	11	48	1.79
223958--223998	18	2.3	18	86	0	55	21	24	9	43	1.83
235550--235582	13	2.5	13	90	0	57	57	0	36	6	1.23
247671--247738	23	3.0	23	77	0	73	19	23	25	32	1.97
253251--253311	26	2.4	25	78	10	61	57	9	0	32	1.32
253781--253892	23	4.8	23	80	7	102	33	21	26	17	1.96
254626--254690	11	5.6	11	72	22	53	24	23	26	26	2.00
254625--254696	23	3.1	23	83	2	99	25	23	26	25	2.00
254675--254711	17	2.2	17	90	0	56	32	29	13	24	1.93
254988--255075	21	4.2	20	75	13	70	43	29	0	27	1.55
254988--255075	42	2.1	42	83	8	108	43	29	0	27	1.55
255011--255083	35	2.1	35	85	10	96	43	27	0	28	1.55
255336--255376	14	3.1	14	76	20	52	41	0	4	53	1.22
256543--256581	3	13.0	3	100	0	78	66	0	0	33	0.92
256601--256674	23	3.1	23	78	9	69	43	2	0	54	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264644--264692	5	9.8	5	80	8	55	22	32	38	6	1.79
268095--268148	18	3.0	18	97	0	99	11	18	20	50	1.77
269401--269489	46	2.0	46	90	2	144	25	16	26	30	1.97
272221--272272	20	2.6	20	93	0	86	23	25	25	26	2.00
278191--278281	45	2.0	46	89	2	139	26	17	27	28	1.98
281429--281529	35	2.8	36	90	3	150	33	2	17	45	1.64
284623--284679	30	1.9	30	85	0	78	64	1	1	31	1.13
286918--286976	15	4.1	14	72	24	52	45	0	5	49	1.24
288774--288931	79	2.0	80	82	9	196	24	30	10	34	1.90
291274--291397	61	2.0	61	96	3	232	24	35	14	25	1.93
291459--291483	12	2.1	12	100	0	50	32	32	16	20	1.94
294331--294372	20	2.2	20	84	12	54	59	0	0	40	0.97
297216--298276	265	4.0	265	98	0	2016	30	19	16	33	1.94
308923--308973	26	2.0	26	96	0	93	33	5	7	52	1.54
310446--310669	126	1.8	125	91	3	337	36	8	11	43	1.72
310567--310784	115	1.9	115	91	0	355	37	10	11	41	1.74
311276--311348	27	2.9	25	71	17	62	26	5	1	67	1.21
319616--319670	22	2.5	22	90	0	92	36	9	14	40	1.78
320348--320521	76	2.3	76	90	0	276	25	20	20	33	1.97
320542--320842	113	2.7	113	96	0	548	38	14	20	25	1.92
320782--320882	40	2.5	40	96	0	193	46	9	24	18	1.80
320669--320995	153	2.1	153	98	0	627	38	14	22	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320822--321108	113	2.5	113	98	0	556	37	14	21	26	1.92
320556--321374	266	3.1	266	96	1	1473	38	14	21	26	1.91
320935--321261	153	2.1	153	95	1	584	39	13	21	25	1.90
321048--321148	40	2.5	40	98	0	193	45	9	25	18	1.80
321089--321713	113	5.3	118	85	8	707	39	15	19	25	1.91
323242--323597	114	3.0	117	76	14	329	38	8	9	42	1.69
323401--323612	114	1.9	115	89	1	336	37	9	10	41	1.74
328664--328709	23	2.0	23	86	0	65	34	13	19	32	1.90
329173--329211	20	1.9	21	94	5	71	38	20	0	41	1.53
328780--330500	463	3.7	472	91	7	2747	40	10	7	41	1.68
330099--330169	21	3.3	21	82	7	97	39	22	4	33	1.74
330104--330174	23	3.2	23	82	8	101	39	22	4	33	1.74
328780--330500	937	1.8	921	92	6	2885	40	10	7	41	1.68
332548--332663	57	2.0	58	98	1	225	43	10	18	26	1.82
333139--333337	100	2.0	98	91	6	321	37	17	15	29	1.91
334638--334712	3	25.0	3	86	0	78	22	33	8	36	1.84
334642--334729	12	7.3	12	82	0	86	20	32	9	37	1.84
334642--334729	18	4.9	18	81	0	86	20	32	9	37	1.84
334672--334729	6	9.7	6	82	0	62	20	32	6	39	1.79
336196--337161	393	2.4	396	94	3	1678	30	17	14	36	1.90
336196--337161	199	4.9	200	94	3	1665	30	17	14	36	1.90
337276--337324	19	2.6	19	96	0	89	55	10	2	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339210--339274	21	3.1	21	93	0	103	16	30	10	41	1.83
341270--341322	24	2.2	24	83	6	63	26	7	13	52	1.66
341447--341489	20	2.3	18	85	14	61	20	16	11	51	1.75
341452--341510	20	3.0	19	80	9	73	20	15	10	54	1.70
341633--341679	20	2.3	20	89	10	78	17	17	10	55	1.69
341419--341891	181	2.6	182	88	1	691	26	15	13	43	1.85
343557--343598	20	2.1	20	90	0	66	28	26	0	45	1.54
343557--343600	10	4.2	11	83	16	58	27	27	0	45	1.54
343640--343680	18	2.3	18	91	4	66	29	4	2	63	1.28
345874--345945	26	3.0	24	68	27	62	26	6	4	62	1.39
352622--352784	86	1.9	87	96	2	303	39	23	23	12	1.90
354186--354223	20	1.9	20	88	0	58	21	26	10	42	1.85
360536--360581	24	1.9	24	95	0	83	17	13	26	43	1.85
360839--360877	19	2.1	18	85	4	51	35	7	2	53	1.43
364289--365203	215	4.3	216	90	3	1454	50	8	11	29	1.69
365284--365391	2	52.5	2	68	15	60	46	2	5	45	1.41
365285--365369	22	3.9	22	76	17	79	45	2	5	45	1.40
365284--365379	42	2.3	40	82	8	131	44	2	6	46	1.40
365301--365389	42	2.1	42	85	8	119	44	3	6	44	1.46
365459--365496	11	3.5	11	88	0	58	50	2	2	44	1.30
365435--365533	42	2.3	43	81	5	103	47	5	5	42	1.47
365502--365551	17	2.9	17	78	3	55	46	0	4	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365305--365561	142	1.8	141	82	5	333	44	5	6	43	1.51
365502--365606	24	4.4	24	70	14	74	43	0	6	48	1.35
365601--365640	7	5.9	7	85	5	55	20	0	35	45	1.51
365603--365640	20	1.9	20	94	0	67	21	0	31	47	1.51
365610--365667	14	4.3	14	76	4	57	24	1	24	50	1.59
365684--365756	20	3.4	20	74	17	65	38	6	2	52	1.43
365746--365784	13	3.0	13	88	0	60	48	7	2	41	1.45
365746--365808	33	1.9	33	86	0	90	46	9	4	39	1.58
365746--365875	35	3.7	35	76	14	108	43	8	6	41	1.60
365821--365935	18	5.9	18	71	18	79	41	8	7	41	1.65

Tables:   1   2   3   4   5