genome.fa.s8099.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008099.1 Hibiscus syriacus cultivar Beakdansim tig00110627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  767286

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604806--604908	40	2.6	40	82	11	106	75	0	1	21	0.95
604801--604914	21	4.9	22	71	20	81	76	0	1	21	0.93
606769--607928	84	14.1	83	76	6	1016	24	20	25	30	1.99
606734--607928	248	4.8	247	79	5	1225	24	20	25	30	1.99
606740--607928	165	7.2	164	84	3	1352	24	20	25	30	1.99
606740--607928	330	3.6	329	85	3	1500	24	20	25	30	1.99
611915--611947	17	1.9	17	93	0	57	72	9	12	6	1.26
612562--612587	6	4.3	6	100	0	52	50	0	0	50	1.00
613002--613103	45	2.4	44	82	9	113	68	2	3	24	1.20
613037--613118	7	11.4	7	74	17	53	70	1	2	25	1.06
614934--616128	248	4.8	247	78	6	1159	24	19	25	30	1.98
614940--616087	165	7.0	164	85	2	1394	23	19	26	30	1.98
620197--620272	38	2.1	37	85	5	100	21	36	10	31	1.87
621207--621295	38	2.3	38	77	13	90	68	3	4	23	1.23
621233--621301	21	3.5	20	68	11	61	72	0	2	24	0.98
622952--622998	20	2.3	20	78	7	51	46	6	2	44	1.40
628122--629021	125	7.1	125	83	3	1055	32	13	13	41	1.83
628122--629001	261	3.5	251	86	4	1176	32	13	13	40	1.83
629203--629700	200	2.5	198	80	4	554	30	14	14	40	1.86
630033--630291	124	2.1	125	86	2	360	42	13	11	32	1.79
635168--635278	39	2.8	39	97	0	204	27	19	10	41	1.85
637540--637586	23	2.0	23	87	0	67	19	19	27	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
638308--638352	21	2.1	21	87	0	63	31	28	24	15	1.96
639272--639426	31	5.0	31	92	3	251	20	20	23	36	1.95
639274--639426	61	2.5	62	93	3	256	20	20	22	36	1.95
642561--642605	21	2.1	21	87	0	63	31	28	24	15	1.96
643530--643647	31	3.8	31	92	2	184	20	19	23	36	1.95
644506--644570	31	2.1	31	94	0	112	30	6	15	47	1.70
644510--644580	31	2.3	31	87	0	97	29	5	15	49	1.67
644979--645009	16	1.9	16	100	0	62	38	6	12	41	1.69
655793--656073	139	2.0	139	100	0	562	40	18	13	27	1.88
655835--656050	69	3.1	69	62	27	166	39	19	12	27	1.89
660480--660586	53	2.0	53	100	0	214	29	11	9	49	1.70
660738--660797	31	1.9	31	90	6	95	40	15	21	23	1.91
663956--663987	12	2.7	12	90	0	55	15	15	15	53	1.74
667612--667648	14	2.6	14	95	0	65	32	8	18	40	1.80
669316--669508	40	4.6	40	72	12	163	21	32	20	25	1.98
669356--669590	42	5.5	42	77	8	183	23	31	20	24	1.98
669228--669541	128	2.4	127	89	3	461	22	30	20	25	1.98
669356--669713	170	2.1	171	85	5	483	23	30	20	25	1.99
669393--669726	84	3.9	85	70	11	263	23	30	21	25	1.99
680766--680817	21	2.5	21	100	0	104	13	15	46	25	1.82
682403--682477	10	6.7	10	73	26	62	22	37	28	12	1.90
682406--682454	14	3.8	14	79	20	70	20	38	28	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682403--682458	24	2.3	24	100	0	112	21	37	28	12	1.90
682427--682502	34	2.3	33	86	2	98	23	32	31	11	1.91
682444--682501	20	2.7	21	82	12	73	24	32	32	10	1.89
682421--682535	33	3.5	33	84	1	122	25	29	34	10	1.89
682444--682536	10	8.7	10	68	13	51	25	27	36	9	1.88
682474--682548	33	2.3	33	92	0	123	28	24	40	8	1.83
682552--682607	29	1.9	29	92	0	94	19	28	39	12	1.88
682636--682660	12	2.1	12	100	0	50	16	36	8	40	1.77
682678--682733	29	1.9	29	100	0	112	19	28	35	16	1.93
689836--689888	21	2.4	23	81	12	58	22	7	5	64	1.41
701954--702051	37	2.8	36	87	4	137	44	11	13	30	1.78
701948--702085	37	3.8	37	81	4	129	42	11	12	33	1.78
702443--702477	14	2.5	14	95	0	61	28	5	2	62	1.32
705385--705423	8	5.0	8	84	6	53	10	17	12	58	1.61
706557--706616	7	8.6	7	75	10	52	83	5	11	0	0.80
706555--706616	25	2.5	25	81	2	81	80	6	12	0	0.89
707215--707258	22	2.0	22	91	8	72	38	22	11	27	1.88
708209--708490	36	8.0	36	79	8	303	26	19	13	40	1.89
708167--708490	72	4.6	73	75	10	223	26	19	14	38	1.91
708265--708453	102	1.9	102	87	2	281	27	19	13	40	1.88
708229--708553	138	2.4	137	83	2	436	28	20	12	39	1.89
708465--708602	67	2.1	68	84	4	183	32	22	7	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709211--709870	105	6.3	105	91	2	979	33	26	18	22	1.96
710417--710518	34	2.9	36	88	5	163	44	13	12	29	1.81
710910--710949	18	2.3	18	83	8	57	25	5	2	67	1.23
715783--715900	20	5.9	20	86	4	148	29	22	21	26	1.99
716075--716117	22	2.0	22	95	0	77	23	41	16	18	1.89
716515--716567	20	2.7	20	90	0	79	16	18	26	37	1.93
716552--716590	20	2.0	20	100	0	78	10	10	20	58	1.59
716554--716597	20	2.2	20	91	0	70	11	11	20	56	1.64
718315--718364	18	2.8	18	90	0	82	30	18	8	44	1.78
718582--718629	20	2.4	20	82	6	62	18	16	27	37	1.92
718813--718860	20	2.4	21	75	6	55	35	20	10	33	1.87
718361--718934	308	1.9	305	85	6	800	29	16	18	36	1.92
718910--718956	18	2.5	19	82	6	60	19	17	27	36	1.93
720943--721004	14	4.3	14	77	6	61	40	0	12	46	1.42
721118--721156	20	2.0	20	89	0	60	48	23	17	10	1.78
721166--721295	20	6.8	20	81	10	119	26	18	22	32	1.97
721241--721267	14	1.9	14	100	0	54	7	14	29	48	1.71
721266--721535	140	1.9	140	97	0	513	42	15	13	27	1.85
724765--724861	21	4.7	21	71	6	56	34	18	20	26	1.96
730453--730573	40	3.0	40	100	0	242	47	12	17	23	1.81
736760--736792	13	2.5	13	100	0	66	42	15	12	30	1.83
739253--739621	20	18.5	20	84	5	433	34	25	18	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
740303--740349	24	2.0	24	87	8	69	25	14	21	38	1.92
740524--740548	12	2.1	12	100	0	50	72	0	28	0	0.86
742830--743084	19	14.4	19	80	16	316	47	18	20	14	1.83
742830--743084	33	7.2	34	82	13	240	47	18	20	14	1.83
742858--743084	52	4.2	55	89	9	298	47	17	21	14	1.83
742897--743122	71	3.2	71	83	13	311	46	17	20	15	1.85
742830--743106	90	3.2	89	88	8	387	46	18	20	14	1.84
742830--743122	142	2.1	139	91	5	466	46	18	20	15	1.84
742830--743106	52	5.3	55	86	11	290	46	18	20	14	1.84
743113--743214	19	5.6	19	82	12	142	14	23	16	45	1.85
743321--743357	14	2.6	14	91	0	65	45	21	0	32	1.52
745258--745322	18	3.4	19	83	10	80	44	27	16	10	1.81
745258--745391	19	7.6	19	75	18	119	45	23	19	11	1.82
745313--745369	14	3.7	14	77	20	60	45	22	21	10	1.82
745258--745386	33	3.8	33	87	5	168	46	24	18	10	1.81
745387--745514	19	7.3	19	73	19	116	8	17	28	45	1.78
745387--745477	32	2.8	34	90	6	143	7	18	28	45	1.77
745558--746028	93	5.1	93	97	1	903	46	18	12	22	1.83
745558--746028	184	2.6	185	98	0	917	46	18	12	22	1.83
747732--747821	14	5.7	14	74	23	81	42	23	25	8	1.83
747724--747838	33	3.5	33	95	0	212	45	20	24	9	1.81
747731--747843	19	6.8	18	72	23	88	43	22	24	9	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747855--747909	14	3.6	14	73	21	56	9	25	23	41	1.83
747839--747909	33	2.2	33	94	0	124	8	22	25	43	1.81
747850--747931	33	2.5	33	89	2	119	9	25	21	42	1.84
747862--747950	20	4.8	20	72	19	75	12	24	19	43	1.85
748030--748100	33	2.2	33	92	0	115	47	18	22	11	1.80
748282--748336	22	2.5	22	81	0	74	20	16	40	23	1.91
748482--748674	20	9.6	20	82	5	219	19	19	25	35	1.95
748482--748674	60	3.2	60	83	0	251	19	19	25	35	1.95
748730--748781	20	2.6	20	96	0	95	21	13	26	38	1.90
755545--755578	16	2.1	16	94	0	59	32	26	8	32	1.87

Tables:   1   2   3   4   5