genome.fa.s8099.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008099.1 Hibiscus syriacus cultivar Beakdansim tig00110627_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  767286

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 496 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365818--365938	38	3.1	37	80	15	136	42	8	7	42	1.63
365924--365951	13	2.2	13	100	0	56	46	7	7	39	1.59
365910--365973	33	2.0	32	84	6	85	39	10	7	42	1.69
365965--366089	2	60.0	2	68	24	64	42	5	4	48	1.45
365964--366089	20	6.0	20	72	18	89	42	6	3	47	1.47
366037--366111	34	2.2	33	81	6	80	45	5	1	48	1.33
366170--366284	51	2.3	50	86	8	162	46	7	3	42	1.50
366141--366327	84	2.2	85	83	8	247	45	6	3	43	1.48
366227--366316	33	2.6	35	89	7	148	44	6	3	45	1.46
366338--366499	21	7.5	21	74	14	125	41	6	4	48	1.48
366359--366565	88	2.4	88	84	6	260	42	5	3	48	1.42
366394--366626	88	2.8	82	76	15	203	44	4	2	48	1.36
366480--366540	31	2.0	31	90	6	97	40	4	3	50	1.40
366531--366615	44	1.9	44	83	9	111	48	2	1	48	1.22
366562--366624	16	3.8	16	76	17	65	49	0	1	49	1.10
366495--366644	28	5.7	26	73	19	100	46	2	1	49	1.24
370771--370808	13	2.8	13	82	17	51	60	0	2	36	1.11
370787--370904	19	6.5	19	70	19	74	57	1	5	35	1.31
370908--370960	27	2.0	27	82	10	65	50	3	0	45	1.19
374533--374653	35	3.4	35	84	5	161	33	3	19	42	1.68
374533--374650	36	3.3	36	83	7	150	33	3	19	43	1.68
379144--379227	37	2.3	37	89	6	127	36	4	15	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389885--389917	17	1.9	17	88	11	50	51	9	3	36	1.49
390087--390114	2	14.0	2	100	0	56	0	50	0	50	1.00
390798--391007	105	2.0	105	99	0	411	28	20	13	38	1.90
395297--395327	2	15.5	2	100	0	62	51	0	0	48	1.00
405328--405356	13	2.1	14	93	6	51	48	17	20	13	1.81
410405--410441	17	2.2	17	95	0	65	0	35	40	24	1.55
410473--410497	3	8.3	3	100	0	50	0	32	36	32	1.58
415002--415064	3	21.0	3	100	0	126	66	0	0	33	0.92
419354--419414	21	3.2	21	65	29	64	31	4	21	42	1.74
419346--419465	35	3.3	36	88	6	172	32	5	19	43	1.72
423828--423888	21	3.2	21	63	29	55	32	4	19	42	1.73
423820--423938	35	3.3	36	90	5	179	32	5	18	43	1.72
424406--424447	20	2.0	20	82	13	50	54	21	2	21	1.56
426602--426640	18	2.2	17	86	4	51	33	5	17	43	1.72
437467--437506	16	2.5	16	87	0	53	57	7	7	27	1.53
443525--443619	45	2.1	47	84	4	122	29	10	16	43	1.82
453123--453193	9	7.4	9	71	16	54	71	0	16	11	1.13
453123--453193	19	3.7	18	75	17	54	71	0	16	11	1.13
453120--453174	29	1.9	28	88	3	83	74	0	16	9	1.06
453181--453260	27	3.0	26	76	9	72	73	3	17	5	1.16
454284--454318	17	2.1	17	89	10	54	42	2	25	28	1.69
454696--454997	109	2.8	109	83	3	329	28	17	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454699--454997	55	5.5	55	86	1	316	29	17	24	28	1.97
458557--458586	12	2.5	12	88	0	51	50	40	0	10	1.36
470296--470324	2	15.0	2	92	7	51	48	0	0	51	1.00
491259--491357	9	10.3	9	74	10	72	18	26	24	31	1.97
491288--491339	19	2.8	19	82	8	54	19	26	25	28	1.98
491363--491392	14	2.1	14	100	0	60	23	53	23	0	1.46
491362--491401	14	2.5	17	84	15	59	22	50	22	5	1.68
493157--493190	16	2.1	17	88	5	52	44	20	0	35	1.52
496801--496858	16	3.2	19	71	28	54	67	0	8	24	1.18
496805--496876	37	1.9	37	83	5	92	63	0	12	23	1.28
496889--496927	8	5.0	8	90	3	53	51	7	0	41	1.31
498150--498228	41	1.9	41	97	0	149	44	2	16	36	1.61
498602--499304	105	6.7	105	96	0	1235	22	18	25	33	1.96
505038--505171	65	2.1	65	100	0	268	22	25	14	37	1.93
509567--509610	20	2.2	20	88	8	63	72	2	6	18	1.17
510882--510953	37	1.9	37	83	5	92	63	0	12	23	1.28
512223--512301	41	1.9	41	94	0	140	45	2	15	36	1.59
515570--515604	12	2.9	12	91	0	52	28	31	8	31	1.87
521671--521714	22	2.0	22	82	8	54	63	2	6	27	1.31
529166--529222	28	2.1	28	90	3	89	38	7	12	42	1.70
532435--532469	18	2.0	18	88	5	54	71	0	14	14	1.15
532506--532598	36	2.6	36	81	5	109	72	3	2	22	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532503--532565	32	2.0	32	81	12	76	69	4	1	23	1.16
532610--532634	2	12.5	2	100	0	50	52	0	0	48	1.00
532746--532793	25	1.9	25	83	8	62	58	0	4	37	1.18
534163--534420	110	2.4	109	83	7	314	23	18	24	34	1.96
535137--535303	65	2.5	66	85	6	214	38	8	20	31	1.84
535219--535404	101	1.8	101	87	0	273	39	12	18	29	1.87
535367--535559	36	5.5	36	76	13	204	37	11	21	29	1.89
535205--535634	102	4.2	102	83	5	426	37	12	19	30	1.89
535473--535559	37	2.4	36	88	1	120	39	12	21	26	1.89
535371--535634	102	2.6	102	92	2	431	35	12	20	30	1.90
537277--537305	13	2.3	13	94	5	51	0	13	6	79	0.93
537287--537317	16	1.9	16	93	0	53	0	9	6	83	0.79
540429--540475	17	2.7	17	81	12	60	72	0	12	14	1.13
540573--540612	14	2.9	14	85	7	55	77	0	5	17	0.94
540735--540781	9	5.0	9	78	17	51	57	0	4	38	1.18
540736--540782	14	3.1	15	87	9	60	59	0	4	36	1.17
540750--540834	36	2.3	37	80	9	102	65	0	4	29	1.12
546250--546303	26	2.0	27	89	3	83	37	9	27	25	1.87
547701--547919	109	2.0	109	98	0	420	21	14	16	47	1.83
548756--548795	20	2.0	21	85	5	55	57	5	25	12	1.55
551830--551941	35	3.2	35	88	0	170	43	22	0	33	1.53
552518--552619	51	2.0	51	96	3	188	41	5	3	49	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552542--552625	25	3.3	25	69	9	80	39	8	3	48	1.51
552725--552837	35	3.2	33	85	7	136	35	0	23	40	1.61
553679--553732	20	2.7	20	71	21	58	29	27	14	27	1.95
553749--553848	21	4.8	21	88	0	128	23	23	16	38	1.93
553840--553955	20	5.8	20	88	2	162	37	24	17	20	1.93
553840--553969	20	6.6	20	82	7	142	36	23	16	23	1.94
554112--554142	16	1.9	16	93	0	53	29	3	0	67	1.06
554839--554885	24	2.0	24	95	0	85	27	21	17	34	1.95
557165--557199	17	2.0	18	88	5	54	54	22	2	20	1.58
557553--557610	20	2.9	20	97	0	107	15	25	24	34	1.95
557585--557678	34	2.8	34	86	0	143	19	22	20	38	1.94
557653--557690	20	1.9	20	100	0	76	13	15	26	44	1.83
561458--561504	20	2.4	20	89	3	69	12	17	21	48	1.79
561761--561818	22	2.6	22	75	0	62	22	13	37	25	1.91
561955--562020	21	3.2	21	91	2	98	33	19	24	22	1.97
562030--562100	20	3.6	21	75	12	69	28	15	28	28	1.96
562350--562383	17	1.9	18	88	5	52	29	5	2	61	1.34
563239--563294	24	2.3	24	93	0	94	28	28	14	28	1.95
567847--567885	20	2.0	20	84	0	51	41	0	41	17	1.50
576294--576369	35	2.2	34	81	6	91	34	1	1	63	1.11
591127--591212	28	3.1	28	98	0	163	40	8	16	34	1.78
592820--592876	25	2.5	21	77	20	69	61	3	28	7	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595637--595671	18	1.9	18	94	0	61	62	0	31	5	1.18
596154--596294	69	2.0	69	95	0	255	29	19	23	28	1.98
598528--598552	11	2.3	11	100	0	50	8	0	48	44	1.32
600924--601014	30	3.0	30	98	0	173	40	12	26	20	1.88
603987--604080	34	2.7	35	77	4	102	46	9	11	31	1.72
604069--604099	16	1.9	16	93	0	53	41	19	12	25	1.87
604129--604206	30	2.6	32	84	8	92	60	16	8	14	1.58
604803--604907	17	6.6	16	74	19	76	75	0	1	21	0.96
604791--604910	6	19.3	6	72	20	70	75	1	2	20	1.01
604801--604912	50	2.3	49	84	7	138	76	0	1	20	0.93

Tables:   1   2   3   4   5