genome.fa.s8105.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008105.1 Hibiscus syriacus cultivar Beakdansim tig00110637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5962497

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  11  of  30  ( 3521 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2035151--2035211	21	2.9	20	85	7	77	26	19	27	26	1.99
2044617--2044671	12	4.6	12	83	0	74	12	16	47	23	1.81
2044859--2044883	6	4.2	6	100	0	50	0	64	16	20	1.30
2045079--2045194	4	28.0	4	70	13	56	65	9	0	24	1.28
2045083--2045260	46	3.8	45	74	11	144	64	8	2	25	1.34
2045078--2045144	27	2.5	28	76	13	70	65	8	1	23	1.29
2045117--2045153	19	1.9	19	100	0	74	64	8	0	27	1.21
2045129--2045194	27	2.4	27	82	0	78	65	10	0	24	1.24
2045076--2045234	46	3.3	48	76	11	155	62	8	2	25	1.37
2046320--2046446	51	2.5	50	76	5	121	18	32	26	22	1.97
2046415--2046498	41	2.0	41	83	0	105	17	28	34	19	1.95
2049439--2049531	21	4.5	21	81	4	109	39	17	24	18	1.91
2049520--2049614	20	4.7	20	80	2	91	34	24	17	23	1.96
2049439--2049531	41	2.3	41	98	0	177	39	17	24	18	1.91
2049517--2049594	41	1.9	41	86	0	111	39	21	16	21	1.92
2049439--2049567	20	6.3	20	70	11	66	41	17	21	19	1.91
2049802--2049845	22	2.0	22	95	0	79	20	45	15	18	1.85
2050109--2050146	20	1.9	20	88	0	58	13	15	21	50	1.78
2051466--2051510	18	2.5	18	88	0	72	26	44	15	13	1.83
2051907--2051947	6	6.7	6	85	2	55	0	2	21	75	0.92
2051907--2051940	12	2.8	12	100	0	68	0	0	23	76	0.79
2051907--2051950	18	2.4	19	88	3	63	0	2	22	75	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2052004--2052049	20	2.3	20	88	0	65	36	26	21	15	1.93
2052059--2052116	14	3.9	14	75	16	62	50	24	17	8	1.74
2052004--2052133	19	7.3	18	69	20	69	44	22	20	13	1.85
2052043--2052126	32	2.6	32	92	1	132	48	20	19	11	1.79
2052150--2052207	14	3.9	14	79	16	71	8	17	25	48	1.75
2052145--2052223	32	2.4	33	95	2	142	10	18	24	46	1.80
2052164--2052281	20	6.4	19	77	11	95	13	20	24	41	1.88
2054133--2054168	14	2.6	14	90	0	54	30	0	22	47	1.52
2054285--2054352	19	3.8	19	85	14	101	47	16	23	13	1.81
2054371--2054428	20	2.9	20	92	0	89	17	20	22	39	1.92
2055524--2055582	24	2.5	24	82	0	73	28	16	18	35	1.93
2055756--2055780	12	2.1	12	100	0	50	72	0	28	0	0.86
2058074--2058204	19	7.7	19	66	23	94	42	19	22	14	1.88
2058074--2058200	33	3.8	33	88	4	202	42	19	22	14	1.88
2058075--2058207	66	2.0	66	97	0	248	41	19	22	16	1.90
2058200--2058239	20	2.0	20	85	4	55	15	17	22	45	1.85
2058383--2058419	14	2.6	14	91	0	65	45	24	0	29	1.53
2059796--2059876	21	3.9	21	66	6	65	23	20	33	22	1.97
2059812--2059903	42	2.2	42	86	0	121	23	15	38	22	1.92
2061905--2062098	20	10.8	19	67	18	94	43	21	21	12	1.86
2061930--2062060	33	4.0	32	89	4	172	40	24	22	12	1.88
2061997--2062098	19	5.6	19	75	13	106	45	22	19	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2062696--2062768	20	3.7	20	90	3	112	27	20	27	24	1.99
2062777--2062830	20	2.7	20	97	0	99	25	18	24	31	1.97
2062717--2062833	61	1.9	61	85	0	162	23	17	24	33	1.97
2062717--2062851	61	2.2	61	81	2	155	22	20	24	32	1.98
2063633--2063681	25	2.0	24	84	11	64	48	0	6	44	1.27
2063947--2064052	39	2.7	39	76	13	110	43	2	16	36	1.63
2064440--2064515	31	2.5	31	78	4	82	47	14	9	28	1.75
2064790--2064838	21	2.4	21	80	10	57	69	0	4	26	1.06
2066266--2066303	19	2.0	19	94	0	67	65	0	0	34	0.93
2066682--2066876	60	3.2	60	83	1	221	43	19	13	24	1.87
2068517--2068564	18	2.6	18	83	3	60	60	0	2	37	1.09
2072053--2072214	77	2.1	77	90	0	252	32	19	19	29	1.96
2074258--2074436	60	3.0	60	83	0	225	40	20	16	22	1.91
2075462--2075509	22	2.2	21	78	7	51	58	4	2	35	1.29
2081456--2081488	16	2.1	17	88	11	52	30	9	6	54	1.56
2083757--2083798	20	2.1	20	100	0	84	23	16	19	40	1.91
2084950--2084982	15	2.2	15	100	0	66	27	0	60	12	1.32
2090895--2090928	14	2.4	14	95	0	59	35	11	17	35	1.87
2090963--2091032	28	2.5	29	79	11	83	30	15	22	31	1.95
2092963--2093029	30	2.2	30	89	0	98	13	28	25	32	1.93
2093633--2093671	17	2.3	17	86	8	53	56	0	0	43	0.99
2093639--2093681	17	2.5	17	80	3	50	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2093632--2093690	27	2.4	23	80	11	64	55	0	0	44	0.99
2094639--2094674	17	2.2	16	90	5	54	30	0	5	63	1.17
2099505--2099534	2	15.0	2	100	0	60	50	0	0	50	1.00
2101866--2101912	3	15.7	3	95	0	85	29	2	0	68	1.02
2103740--2103885	73	2.0	71	92	2	238	43	13	13	30	1.81
2107162--2107195	16	2.1	16	100	0	68	20	44	0	35	1.52
2128931--2129078	75	2.0	75	94	0	260	34	21	16	27	1.95
2142196--2142224	14	2.0	15	93	6	51	72	0	0	27	0.85
2151027--2151104	20	3.8	20	75	11	77	43	25	8	21	1.82
2151027--2151118	41	2.2	41	90	0	139	43	26	8	21	1.81
2161342--2161424	20	4.1	20	75	18	82	16	27	31	24	1.97
2163781--2165310	785	1.9	785	94	0	2684	33	20	12	33	1.90
2174407--2174457	23	2.2	23	100	0	102	27	31	11	29	1.92
2176333--2176385	22	2.4	22	96	0	97	16	16	18	47	1.83
2182130--2182165	18	2.0	18	88	0	54	77	2	11	8	1.08
2182494--2182563	22	3.2	22	84	8	72	41	21	11	25	1.86
2182837--2182876	20	2.0	20	85	0	53	25	17	20	37	1.94
2187081--2187129	16	3.1	17	88	11	77	4	28	0	67	1.09
2187083--2187125	22	1.9	23	86	13	63	4	25	0	69	1.07
2189043--2189132	2	45.0	2	97	0	171	48	0	0	51	1.00
2189184--2189250	5	13.2	5	80	12	66	16	2	2	77	1.01
2189194--2189254	32	1.9	32	86	6	88	16	1	3	78	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2193630--2193662	14	2.4	14	94	0	57	27	39	18	15	1.90
2196957--2196997	16	2.5	17	81	18	52	80	2	7	9	0.99
2197999--2198096	42	2.3	43	85	5	137	33	30	13	22	1.92
2200110--2200162	8	6.1	8	82	8	52	18	1	1	77	0.96
2200110--2200162	17	3.1	16	83	10	52	18	1	1	77	0.96
2200181--2200216	2	18.0	2	100	0	72	50	0	0	50	1.00
2200291--2200315	9	2.8	9	100	0	50	0	20	0	80	0.72
2200333--2200363	2	15.5	2	100	0	62	48	0	0	51	1.00
2200369--2200421	25	2.1	25	86	6	72	15	1	3	79	0.96
2200369--2200432	15	4.3	15	71	11	51	15	3	3	78	1.01
2200370--2200397	10	2.8	10	100	0	56	17	0	0	82	0.68
2202580--2202606	12	2.2	12	100	0	54	25	0	40	33	1.56
2203633--2203688	28	2.0	28	96	0	103	46	12	0	41	1.42
2203642--2203707	28	2.4	28	82	7	73	45	13	1	39	1.53
2204032--2204098	30	2.2	30	86	5	91	44	8	17	28	1.79
2208130--2208264	59	2.3	59	87	2	191	33	25	14	26	1.95
2214685--2215726	108	9.6	108	89	2	1330	27	27	14	29	1.95
2214685--2215726	163	6.4	162	88	2	1407	27	27	14	29	1.95
2216500--2216908	128	3.2	127	89	3	599	22	27	15	34	1.94
2218152--2218181	16	1.9	16	93	6	53	13	20	0	66	1.24
2218151--2218243	6	15.2	6	71	19	59	7	18	0	74	1.05
2218198--2218235	16	2.4	16	86	8	51	7	13	0	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2218174--2218258	11	7.2	12	71	20	56	5	18	0	75	1.00
2220551--2220585	6	5.8	6	90	9	54	48	17	17	17	1.81
2228224--2228505	43	6.6	42	84	2	321	21	20	22	35	1.96
2230357--2230388	15	2.3	15	89	10	50	37	0	0	62	0.95
2231818--2231965	68	2.2	67	81	3	172	31	18	22	28	1.97
2248324--2248362	14	2.7	14	88	4	51	58	2	0	38	1.12
2248324--2248365	15	3.0	14	82	10	50	57	2	0	40	1.12
2250233--2250842	304	2.0	305	93	0	1053	26	15	17	40	1.89
2252054--2252112	24	2.5	24	83	8	77	23	6	15	54	1.65
2252240--2252279	20	2.0	20	90	9	64	17	12	5	65	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30