Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008105.1 Hibiscus syriacus cultivar Beakdansim tig00110637_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5962497

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   

This is table  30  of  30  ( 3521 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5875361--5875414
24
2.2
24
86
0
72
24
16
18
40
1.90
5877667--5877702
18
2.0
18
94
0
63
55
25
2
16
1.55
5878020--5878087
20
3.4
20
87
6
93
17
17
22
42
1.89
5878210--5878246
14
2.6
14
82
0
56
51
16
0
32
1.45
5879676--5879774
42
2.4
42
81
6
119
24
19
34
22
1.96
5879656--5879773
21
5.7
20
74
12
85
23
20
34
21
1.96
5879918--5879963
4
11.5
4
80
0
56
67
4
2
26
1.21
5881944--5881996
20
2.7
20
87
0
88
50
22
16
9
1.74
5882036--5882206
20
8.6
20
74
14
120
18
14
26
40
1.89
5882036--5882206
40
4.3
40
78
9
143
18
14
26
40
1.89
5882014--5882162
60
2.5
60
81
5
176
18
14
25
40
1.89
5887307--5887401
32
3.0
31
80
6
84
28
23
28
20
1.98
5887328--5887437
32
3.4
32
86
2
132
29
28
25
17
1.97
5890061--5890098
2
19.5
2
94
5
69
52
0
0
47
1.00
5892979--5893059
39
2.1
39
93
2
137
23
17
37
22
1.94
5899587--5899653
20
3.3
20
91
0
107
35
22
17
23
1.95
5899644--5899688
20
2.2
20
96
0
81
44
22
13
20
1.85
5899583--5899673
40
2.3
41
81
9
107
39
20
16
23
1.92
5899847--5899897
22
2.3
22
100
0
102
21
45
13
19
1.85
5900263--5900316
19
2.8
20
83
8
76
16
16
20
46
1.84
5902192--5902284
21
4.4
21
82
2
107
23
34
17
24
1.96
5902192--5902284
42
2.2
42
86
3
125
23
34
17
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5903629--5903777
64
2.3
64
94
0
253
29
2
16
51
1.56
5903836--5903940
20
5.2
20
84
0
138
36
23
20
20
1.95
5903836--5903948
40
2.8
40
80
0
154
34
23
21
21
1.97
5906434--5906511
24
3.2
24
94
0
129
38
19
16
25
1.92
5906450--5906525
24
3.2
24
88
0
71
35
18
17
28
1.93
5922813--5922851
20
2.0
20
95
5
71
35
15
7
41
1.76
5922816--5922864
20
2.5
19
83
6
53
44
10
6
38
1.63
5930973--5931012
21
1.9
21
89
0
62
25
40
25
10
1.86
5941076--5941130
21
2.6
21
91
0
92
7
30
40
21
1.81
5942632--5942658
10
2.7
10
100
0
54
40
51
7
0
1.30
5949164--5949208
21
2.1
21
88
8
65
46
0
0
53
1.00
5952356--5952383
3
9.3
3
100
0
56
67
0
0
32
0.91
5952770--5953327
65
8.6
66
84
6
625
41
14
15
28
1.87
5952935--5953040
35
3.5
30
73
20
103
41
15
14
29
1.86
5954759--5954810
24
2.2
24
82
6
61
3
11
5
78
1.05
5954758--5954849
13
6.7
13
72
14
60
4
10
4
80
0.99
5954826--5954856
16
1.9
16
100
0
62
3
12
0
83
0.75
5954758--5954856
18
5.2
17
73
16
63
4
12
4
79
1.00
5960739--5960789
3
17.3
3
87
4
77
62
0
1
35
1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30

The End!