genome.fa.s8155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008155.1 Hibiscus syriacus cultivar Beakdansim tig00110721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  962042

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 595 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4116--4144	14	2.1	14	93	6	51	34	6	20	37	1.80
4297--4367	32	2.2	33	82	10	83	59	7	0	33	1.25
6655--6703	2	24.5	2	100	0	98	48	0	0	51	1.00
7627--7674	21	2.2	23	85	7	64	54	0	0	45	0.99
8219--8261	22	2.0	22	100	0	86	69	0	20	9	1.15
11397--11456	12	5.1	12	76	10	61	40	25	16	18	1.91
11486--11524	21	1.9	21	94	5	71	23	30	20	25	1.98
12129--12176	23	2.0	25	88	8	73	29	25	25	20	1.99
13100--13143	21	2.1	21	91	0	70	29	25	27	18	1.98
14472--14507	18	2.0	18	100	0	72	11	22	33	33	1.89
14586--14625	18	2.3	18	95	4	73	15	22	32	30	1.94
14369--14729	118	3.0	121	95	2	656	24	15	24	34	1.95
14737--14796	23	2.6	23	89	0	84	20	25	28	26	1.99
14727--14804	23	3.3	23	80	1	75	23	19	23	34	1.96
18527--18570	21	2.1	21	91	0	70	29	25	27	18	1.98
18597--18641	22	2.0	22	86	4	63	31	33	26	8	1.87
19907--19942	18	2.0	18	100	0	72	11	22	33	33	1.89
19878--20063	62	3.0	62	61	26	142	24	16	25	34	1.95
19804--20063	121	2.1	121	97	0	493	23	16	25	34	1.95
20028--20081	18	3.0	18	100	0	108	11	22	33	33	1.89
19907--20185	139	2.0	139	96	0	513	22	16	25	35	1.95
20193--20252	23	2.6	23	89	0	84	20	25	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20183--20260	23	3.3	23	80	1	75	23	19	23	34	1.96
20945--21014	30	2.3	30	87	0	95	32	20	7	40	1.79
33695--33734	14	2.8	15	85	7	57	35	5	0	60	1.19
36633--36725	47	2.0	46	81	10	109	27	7	4	60	1.43
37058--37103	23	2.0	23	83	8	58	21	28	15	34	1.94
43304--43350	2	24.0	2	95	4	87	48	0	0	51	1.00
43566--43629	31	2.1	31	93	0	110	46	4	23	25	1.71
49203--49248	14	3.3	14	76	11	58	65	0	0	34	0.93
49200--49266	27	2.4	27	95	2	116	61	0	1	37	1.05
49213--49264	14	3.9	13	78	16	54	65	0	1	32	1.04
49702--50132	43	10.2	43	72	8	269	26	18	5	49	1.69
49602--50072	43	11.1	42	72	11	257	26	17	5	50	1.68
49721--50132	126	3.2	125	76	10	372	25	18	5	49	1.70
57753--57784	2	16.0	2	100	0	64	50	0	0	50	1.00
57832--57895	28	2.3	28	97	0	119	39	4	0	56	1.20
57877--57918	21	1.9	23	85	9	61	33	0	2	64	1.07
58276--58327	21	2.5	21	81	3	61	38	19	25	17	1.93
58358--58410	20	2.7	20	77	11	63	28	28	18	24	1.98
58598--58640	22	1.9	23	95	4	79	25	44	13	16	1.85
58906--58963	20	2.9	20	86	0	71	18	15	22	43	1.88
59100--59154	25	2.2	24	78	15	58	20	9	18	52	1.71
60281--60324	18	2.4	18	88	0	70	27	45	13	13	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60860--60923	14	4.2	14	77	16	65	53	20	15	10	1.72
60845--60935	32	2.8	32	86	3	110	50	18	16	14	1.78
60952--61009	14	3.9	14	81	16	71	10	15	22	51	1.73
60947--61025	32	2.4	33	89	2	124	11	17	21	49	1.78
61010--61065	20	2.8	19	86	7	76	17	23	21	37	1.94
63041--63079	20	2.0	20	94	0	69	46	30	10	12	1.75
63072--63125	14	3.5	14	75	22	54	46	20	22	11	1.82
63085--63130	14	2.8	17	75	25	53	45	19	21	13	1.84
63156--63225	20	3.5	20	96	1	124	15	22	27	34	1.95
63438--63488	20	2.5	20	93	0	84	21	29	17	31	1.96
64233--64286	24	2.2	24	90	0	81	22	16	20	40	1.91
64461--64485	12	2.1	12	100	0	50	72	0	28	0	0.86
66775--66905	19	7.7	19	66	23	94	42	19	22	14	1.88
66775--66901	33	3.8	33	88	4	202	42	19	22	14	1.88
66776--66908	66	2.0	66	97	0	248	41	19	22	16	1.90
67064--67100	14	2.6	14	91	0	65	45	24	0	29	1.53
68493--68572	42	1.9	42	84	0	106	22	17	38	21	1.93
68794--68977	91	2.0	90	89	7	282	46	19	11	22	1.82
70759--70828	19	3.7	19	96	0	122	48	21	18	11	1.79
70689--70774	33	2.6	33	94	1	145	38	23	27	10	1.87
70824--70909	19	4.5	19	86	1	118	9	16	24	50	1.74
71425--71476	20	2.7	20	87	3	70	28	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71485--71538	20	2.7	20	97	0	99	25	18	24	31	1.97
71609--71649	21	2.0	21	85	0	55	34	31	17	17	1.93
79468--79514	20	2.3	20	96	0	85	31	27	19	21	1.97
79505--79552	19	2.5	20	96	3	89	45	25	12	16	1.82
79641--79690	20	2.5	20	96	0	91	52	32	0	16	1.44
79720--79777	22	2.6	22	97	0	107	22	44	15	17	1.86
80141--80192	19	2.7	20	85	8	72	13	13	23	50	1.77
81455--81497	16	2.7	16	86	13	70	32	32	27	6	1.84
82212--82305	42	2.2	42	82	0	116	24	35	15	24	1.95
82247--82302	21	2.7	21	74	0	58	23	35	14	26	1.93
83655--83691	14	2.6	14	100	0	74	29	0	21	48	1.50
83852--83955	20	5.2	20	84	0	100	34	20	23	22	1.97
83961--84068	49	2.2	48	90	3	164	25	21	17	36	1.95
84269--84309	12	3.4	12	86	0	55	17	2	24	56	1.53
84276--84310	6	5.8	6	86	0	52	17	2	20	60	1.49
85938--85984	24	2.0	24	95	0	85	34	12	21	31	1.91
85942--85993	24	2.2	24	85	0	68	36	15	19	28	1.92
86892--87020	20	6.5	19	73	14	84	34	14	23	27	1.94
86912--87103	40	4.8	40	76	11	167	31	14	23	30	1.94
86912--87105	20	9.6	20	71	10	117	31	13	24	30	1.94
89140--89172	3	11.7	3	87	12	52	72	0	27	0	0.85
93223--93257	10	3.6	10	88	3	54	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94724--94789	14	4.3	15	70	12	53	63	1	6	28	1.27
95664--95727	23	2.5	25	76	21	62	40	3	0	56	1.15
95934--95997	27	2.3	27	84	7	85	51	0	3	45	1.17
95933--96019	27	3.3	27	81	10	83	50	0	4	44	1.22
95958--96031	25	2.9	25	80	11	71	50	1	5	43	1.33
95972--96031	25	2.4	26	78	10	72	50	1	6	41	1.39
96194--96254	31	2.0	31	93	0	104	55	8	6	29	1.54
97039--97090	20	2.5	19	76	14	50	40	1	0	57	1.10
97049--97157	31	3.7	29	75	19	75	47	0	2	49	1.15
98599--98658	21	2.9	21	90	5	95	18	43	25	13	1.86
114963--115011	24	2.0	25	88	7	75	55	14	18	12	1.69
121033--121073	21	2.0	21	90	9	66	17	41	29	12	1.85
123176--123936	380	2.0	381	99	0	1499	39	6	12	41	1.68
126539--126601	31	2.2	29	83	13	78	30	4	11	53	1.56
127559--127657	31	3.2	31	95	0	180	53	8	8	30	1.59
133382--133442	24	2.5	24	94	0	104	47	6	8	37	1.59
133486--133544	21	2.8	21	94	0	100	37	5	11	45	1.63
146473--146604	18	7.3	18	93	0	228	28	24	26	20	1.99
150923--150956	15	2.4	14	85	9	50	23	17	0	58	1.38
152475--152568	28	3.4	28	78	11	102	39	21	14	24	1.91
167199--167235	15	2.5	15	100	0	74	29	27	16	27	1.97
167357--167953	325	1.8	324	86	2	876	38	9	15	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168240--168279	22	1.9	20	85	10	53	47	5	0	47	1.24
168649--168673	8	3.1	8	100	0	50	64	12	0	24	1.27
171001--171041	21	2.0	21	100	0	82	24	39	19	17	1.92
176378--176423	23	2.0	23	87	8	67	30	26	21	21	1.99
176398--176703	149	2.1	148	90	0	477	37	21	14	26	1.92
178210--178368	63	2.5	62	86	6	205	27	22	18	32	1.97
178336--178373	19	2.0	20	94	5	69	26	28	15	28	1.96
180161--180243	23	3.7	23	77	6	91	25	28	19	26	1.98
180688--180719	13	2.5	13	94	0	55	37	15	6	40	1.73
182767--182807	22	1.9	21	85	5	55	24	34	19	21	1.97

Tables:   1   2   3   4   5