genome.fa.s8155.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008155.1 Hibiscus syriacus cultivar Beakdansim tig00110721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  962042

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 595 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679692--679743	17	3.2	17	75	10	54	32	3	13	50	1.60
686971--687155	21	9.0	21	70	15	136	20	20	23	36	1.95
686977--687155	42	4.3	42	89	4	251	20	19	23	36	1.95
687907--688065	21	7.6	21	82	6	198	30	26	21	21	1.98
687948--688065	42	2.8	42	97	0	218	28	27	22	21	1.99
687907--688084	63	2.9	62	84	5	241	31	25	21	21	1.98
688074--688230	21	7.5	21	82	7	185	23	22	24	28	1.99
688054--688232	83	2.2	83	81	9	204	25	21	24	28	1.99
688773--689078	45	6.8	45	84	1	337	29	21	10	38	1.87
688773--689117	90	3.9	90	79	6	229	28	22	11	37	1.88
689555--689736	95	1.9	95	85	4	251	28	26	14	30	1.95
690816--690879	23	2.8	22	85	4	83	26	26	26	20	1.99
690895--691214	103	3.1	103	96	0	597	37	24	13	25	1.91
691691--691727	19	1.9	19	88	0	56	10	29	35	24	1.89
691755--691797	21	2.0	21	81	0	50	18	25	27	27	1.98
697798--697866	23	3.0	22	82	4	75	28	26	23	21	1.99
697882--698202	103	3.1	103	95	0	579	36	23	13	26	1.92
698680--698716	19	1.9	19	88	0	56	10	29	35	24	1.89
698744--698786	21	2.0	21	81	0	50	18	25	27	27	1.98
702499--702547	20	2.5	20	100	0	98	36	16	18	28	1.92
702475--702615	69	2.0	69	81	8	162	37	21	19	20	1.94
703542--703609	21	3.4	20	75	13	68	25	16	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712318--712353	12	3.0	12	91	0	54	22	25	13	38	1.91
712114--712365	132	1.9	132	90	1	398	34	19	18	28	1.95
727471--727534	24	2.7	24	87	0	92	12	10	23	53	1.70
727470--727525	14	4.3	14	69	17	57	10	12	25	51	1.71
727471--727545	24	3.1	24	86	0	87	13	10	21	54	1.68
728620--728694	10	7.7	10	69	21	61	9	12	21	57	1.62
728626--728690	16	4.1	16	95	0	121	7	12	23	56	1.61
742738--742790	27	2.0	27	89	10	83	58	5	0	35	1.22
744876--744920	21	2.1	21	83	0	54	31	31	24	13	1.93
746000--746065	31	2.2	30	81	10	80	30	19	18	31	1.96
746054--746176	30	4.1	30	91	1	194	22	21	24	30	1.99
756682--756723	20	2.2	19	87	8	59	38	11	23	26	1.90
757384--757494	24	4.6	24	71	11	86	19	26	21	32	1.97
774478--774518	21	1.9	21	85	5	55	41	0	4	53	1.22
774602--774635	14	2.5	13	90	4	50	52	0	2	44	1.16
776039--776125	44	2.0	44	86	4	122	20	12	22	43	1.86
781644--781711	31	2.2	31	81	5	75	44	11	8	35	1.72
783205--783280	31	2.5	31	84	0	89	36	13	23	26	1.91
783365--783435	31	2.3	31	95	0	124	39	7	23	29	1.81
783608--783666	32	1.9	30	89	3	82	33	8	32	25	1.86
789874--789931	20	2.6	22	86	10	75	29	24	22	24	1.99
797930--797986	20	2.6	21	83	13	71	31	22	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797950--797987	20	1.9	20	100	0	76	31	21	23	23	1.98
801965--802023	20	2.7	22	87	10	77	30	23	22	23	1.99
808486--808542	26	2.2	26	87	6	80	66	3	10	19	1.36
811377--811410	14	2.3	15	95	5	61	14	41	38	5	1.70
811629--811719	23	3.6	25	74	16	73	41	0	0	58	0.98
811623--811675	28	1.9	27	84	3	70	41	0	0	58	0.98
813428--813519	42	2.2	41	81	11	107	23	28	21	26	1.99
813506--813557	21	2.5	21	75	12	61	19	26	28	25	1.98
814076--814119	12	3.7	12	81	0	52	52	9	2	36	1.46
814114--814150	19	1.9	19	88	0	56	48	2	5	43	1.40
814572--815344	138	5.6	139	90	0	1174	34	24	19	21	1.97
814572--815344	277	2.8	275	90	2	1156	34	24	19	21	1.97
818551--818588	19	2.0	19	89	0	58	52	0	0	47	1.00
821056--821095	14	2.9	14	88	0	53	27	32	15	25	1.95
828125--828174	25	2.0	25	96	0	91	18	24	14	44	1.86
829703--829758	21	2.7	21	85	0	67	32	41	7	19	1.79
831972--832124	60	2.6	60	96	2	283	30	15	16	37	1.90
833577--833618	2	21.5	2	90	4	68	47	0	2	50	1.14
840347--840515	20	7.7	20	68	23	90	21	24	10	43	1.83
840335--840664	46	7.2	46	86	1	459	22	21	9	46	1.80
840335--840664	91	3.6	92	88	1	495	22	21	9	46	1.80
840427--840523	45	2.4	37	70	23	86	21	23	8	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840577--840653	20	3.6	20	70	21	66	22	25	10	41	1.85
840335--840664	137	2.4	137	86	5	355	22	21	9	46	1.80
841058--841110	22	2.5	20	80	11	61	26	26	15	32	1.95
846065--846396	179	1.9	177	89	7	521	46	8	1	42	1.44
846362--846406	20	2.2	21	88	4	65	42	0	2	55	1.12
846328--846401	39	1.9	39	86	2	105	41	0	1	56	1.07
847550--847577	2	14.0	2	100	0	56	50	0	0	50	1.00
849898--850022	56	2.1	59	82	10	150	32	15	19	33	1.92
858448--858561	32	3.6	32	82	0	138	36	14	12	35	1.84
860127--860156	13	2.3	13	100	0	60	16	46	23	13	1.82
869550--869574	13	1.9	13	100	0	50	64	0	28	8	1.22
873826--873889	16	3.8	16	74	24	60	53	1	7	37	1.40
873824--873885	19	3.5	17	75	16	63	53	1	8	37	1.40
874520--874575	22	2.5	22	94	0	103	28	32	26	12	1.93
875125--875287	64	2.5	65	81	5	161	26	22	18	33	1.97
881234--881290	18	2.9	18	82	10	60	26	31	22	19	1.98
881253--881330	22	3.5	22	94	0	138	28	30	26	14	1.95
887074--887191	59	2.0	59	90	1	184	38	28	8	24	1.85
904713--904806	41	2.3	41	92	0	161	40	15	12	30	1.85
904788--904820	17	1.9	17	93	0	57	42	27	3	27	1.70
905933--905970	2	19.0	2	100	0	76	50	0	0	50	1.00
910366--910400	18	1.9	18	94	0	61	42	5	2	48	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914670--914701	2	16.0	2	100	0	64	50	0	0	50	1.00
916336--916363	5	5.6	5	100	0	56	0	60	0	39	0.97
916893--917009	35	3.2	36	87	6	157	32	5	17	44	1.71
921351--921470	35	3.3	36	89	6	181	30	5	20	44	1.72
927623--927654	14	2.3	14	94	0	55	53	0	9	37	1.34
928513--928544	17	1.9	16	93	6	55	25	31	31	12	1.92
928515--928553	17	2.3	17	86	8	53	28	33	23	15	1.95
930112--930285	80	2.2	78	93	2	303	35	27	18	19	1.95
930260--930311	26	2.0	26	100	0	104	30	26	19	23	1.98
930180--930381	106	1.9	106	92	0	341	34	26	18	21	1.96
937487--937542	17	3.4	17	95	2	96	17	41	23	17	1.90
937532--937574	7	6.4	7	84	10	63	18	30	27	23	1.98
937538--937574	13	2.8	13	95	0	65	18	29	27	24	1.98
939720--939844	39	3.2	39	64	20	105	38	25	16	20	1.92
939686--939932	80	3.1	80	94	0	431	35	26	18	19	1.95
940741--940779	17	2.3	17	86	8	53	28	30	25	15	1.96
944032--944065	2	17.0	2	100	0	68	50	0	0	50	1.00
944482--944568	21	4.0	23	78	13	76	44	3	0	51	1.18
944482--944554	24	3.2	24	81	9	64	42	2	0	54	1.14
944482--944540	27	2.2	27	82	11	68	40	1	0	57	1.09
944522--944600	21	3.6	21	75	11	59	49	7	1	41	1.39
946739--946785	16	2.9	16	84	6	60	34	23	2	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948525--948575	25	2.0	25	84	0	66	25	17	27	29	1.98
955491--955700	105	2.0	106	90	2	334	39	13	10	36	1.79
956448--956545	35	2.8	34	83	10	126	42	18	8	30	1.79
958024--958074	2	26.0	2	88	4	68	50	0	5	43	1.26
958074--958202	2	66.0	2	95	4	237	49	0	50	0	1.00

Tables:   1   2   3   4   5

The End!