genome.fa.s8155.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008155.1 Hibiscus syriacus cultivar Beakdansim tig00110721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  962042

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 595 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358695--358766	32	2.1	34	82	14	87	65	1	1	31	1.10
358928--358960	2	16.5	2	93	0	57	51	0	0	48	1.00
360675--360748	3	23.7	3	81	8	85	36	0	1	62	1.04
361119--361181	27	2.3	26	86	5	81	60	9	30	0	1.28
362695--362742	17	2.5	20	83	9	66	31	2	2	64	1.16
364182--364223	7	6.0	7	81	8	50	14	16	14	54	1.71
364182--364223	15	3.0	14	83	10	50	14	16	14	54	1.71
364847--365054	104	2.0	105	98	0	400	40	14	18	25	1.90
367052--367104	26	2.0	26	96	0	97	67	11	16	3	1.35
371841--371895	22	2.5	22	84	0	83	34	10	14	40	1.81
372332--372720	113	3.5	113	93	4	668	38	16	18	26	1.92
372667--372759	39	2.5	39	91	5	147	50	8	22	18	1.73
372444--372984	260	2.1	265	92	3	911	39	15	19	25	1.91
372554--372871	147	2.1	152	92	5	533	41	14	20	23	1.89
372698--373174	113	4.3	113	90	4	715	38	15	18	26	1.91
373040--373089	16	3.1	17	70	18	52	50	6	20	24	1.70
372698--373174	218	2.2	219	89	5	719	38	15	18	26	1.91
372960--373159	105	1.9	104	92	3	337	38	16	17	28	1.91
373529--373598	3	22.7	3	79	5	77	35	1	1	61	1.14
373970--374029	26	2.3	26	80	8	70	63	6	30	0	1.20
374801--374863	27	2.3	28	83	2	83	25	1	3	69	1.12
378817--378865	23	2.1	23	81	7	55	36	12	16	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379175--379663	179	2.7	179	92	1	784	34	10	14	40	1.81
379471--379955	199	2.4	198	89	2	733	33	13	13	39	1.84
385717--385776	23	2.9	20	87	9	77	21	31	26	20	1.98
385759--385798	21	1.9	21	89	0	62	25	40	25	10	1.86
390046--390136	45	2.0	46	93	2	157	26	19	26	27	1.99
390607--390652	20	2.2	20	84	3	56	43	17	17	21	1.88
390440--390741	146	2.1	146	88	1	444	37	13	14	34	1.85
391888--391926	20	2.0	20	94	0	69	30	7	17	43	1.77
391717--392318	191	3.1	197	85	3	774	33	13	11	41	1.81
392302--392354	20	2.6	21	73	8	56	33	7	5	52	1.53
396910--397039	31	4.2	31	90	3	208	33	23	16	26	1.96
398614--398657	3	14.3	3	90	4	70	31	0	0	68	0.90
400099--400139	22	1.9	21	90	5	64	31	0	12	56	1.36
403715--403757	12	3.2	13	75	18	52	20	11	13	53	1.71
406633--406662	15	2.0	15	93	0	51	20	3	0	76	0.92
409706--409807	45	2.3	45	96	0	186	27	14	23	34	1.94
413010--413058	19	2.5	20	77	9	57	18	20	0	61	1.35
416763--416796	17	2.1	16	88	5	50	14	8	0	76	1.01
421090--421213	44	2.9	43	76	8	146	33	24	20	21	1.97
421832--421882	10	5.2	10	84	15	63	39	0	1	58	1.09
421845--421883	3	12.3	3	89	10	60	35	0	0	64	0.94
421835--421879	19	2.3	18	85	14	63	37	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421845--421883	13	3.1	13	89	10	55	35	0	0	64	0.94
423350--423390	22	1.9	21	90	5	64	31	0	12	56	1.36
426243--426308	31	2.1	32	86	5	91	51	3	0	45	1.16
427000--427060	24	2.5	24	74	10	61	68	4	0	26	1.09
427676--427718	15	2.8	15	85	3	50	23	4	0	72	1.04
428476--428506	2	15.5	2	100	0	62	51	0	0	48	1.00
428511--428654	6	23.7	6	76	12	55	70	2	2	24	1.11
428514--428590	3	25.0	3	87	12	104	68	1	0	29	0.97
428511--428654	12	12.4	11	72	15	69	70	2	2	24	1.11
428613--428672	23	2.5	23	82	15	61	75	1	5	18	1.07
431252--431313	15	4.1	15	100	0	124	33	32	19	14	1.92
431458--431507	12	4.2	12	82	7	66	38	24	6	32	1.79
431801--431977	64	2.8	64	87	1	239	26	20	20	31	1.98
431801--432026	64	3.5	62	83	6	233	28	19	20	31	1.97
436642--436688	15	3.1	15	100	0	94	34	31	19	14	1.92
436833--436882	12	4.2	12	82	7	66	38	24	6	32	1.79
437176--437400	64	3.5	64	84	4	233	27	20	20	32	1.97
439659--439714	22	2.5	22	94	0	94	14	26	30	28	1.95
441960--441999	20	2.0	20	90	4	64	17	22	35	25	1.95
441984--442044	23	2.8	21	80	5	68	22	19	31	26	1.98
445856--445895	21	1.9	21	89	0	62	30	7	7	55	1.56
447893--447933	19	2.1	20	90	4	66	12	24	43	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448226--448291	29	2.3	28	84	2	78	65	3	16	15	1.40
449309--449364	14	3.8	14	73	17	51	53	5	0	41	1.24
449330--449627	38	8.4	36	70	23	170	45	7	3	43	1.48
449422--449483	24	2.6	24	97	0	115	40	6	4	48	1.50
449492--449653	69	2.2	72	82	10	181	45	9	3	41	1.53
450552--450598	22	2.0	23	80	12	60	59	2	0	38	1.09
450656--450717	16	3.8	16	71	10	54	50	1	0	48	1.10
450645--450711	34	1.9	35	84	3	91	47	1	0	50	1.10
451407--451494	29	3.0	29	81	0	113	19	31	32	15	1.93
454160--454190	6	5.2	6	92	0	53	29	51	3	16	1.59
460556--460635	23	3.3	24	72	13	83	65	16	2	16	1.39
460530--460656	47	2.7	46	91	3	209	68	14	3	12	1.34
460530--460658	48	2.7	47	92	2	215	68	14	3	13	1.35
463699--463752	3	17.7	3	96	3	99	33	0	0	66	0.92
471348--471503	61	2.5	62	83	9	187	26	19	20	33	1.97
477020--477487	43	11.0	42	78	8	346	26	21	18	33	1.96
477020--477379	85	4.2	84	78	9	295	27	20	18	33	1.96
478004--478128	34	3.8	34	72	19	111	43	9	15	32	1.79
478449--478489	2	21.5	2	80	9	50	46	0	2	51	1.14
478455--478554	20	5.0	20	70	21	75	34	2	2	62	1.18
478513--478632	50	2.4	49	77	15	122	21	5	0	72	1.09
478716--478744	14	2.0	15	93	6	51	20	20	0	58	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480635--480685	18	3.0	18	91	8	81	21	35	11	31	1.90
481198--481236	8	5.0	8	84	6	53	10	17	12	58	1.61
482327--482369	13	3.2	13	81	18	52	79	9	11	0	0.95
482327--482369	14	3.2	13	83	9	50	79	9	11	0	0.95
482983--483026	22	2.0	22	91	8	72	40	22	9	27	1.84
482984--483032	22	2.2	22	85	10	64	46	22	8	22	1.77
483463--483498	18	2.0	18	88	0	54	19	8	30	41	1.81
483978--484127	36	4.1	36	92	0	255	25	20	14	40	1.89
483936--484256	72	4.6	73	76	12	239	26	19	15	38	1.91
483979--484256	72	4.0	71	76	13	308	25	19	14	39	1.90
483998--484318	136	2.4	135	83	5	414	27	19	12	39	1.89
484033--484220	100	1.9	100	89	2	297	26	18	14	40	1.89
484133--484255	35	3.4	36	83	8	153	24	20	15	39	1.91
484246--484369	65	1.9	67	86	5	182	33	20	7	37	1.81
484990--485650	105	6.3	105	88	3	870	33	25	17	22	1.96
486186--486310	34	3.8	34	73	19	120	43	9	16	31	1.79
486588--486656	25	2.8	25	77	14	70	23	4	4	68	1.26
486681--486759	34	2.4	33	83	8	99	27	2	0	69	1.01
486697--486765	26	2.6	27	80	15	72	24	2	0	72	0.98
486667--486774	36	2.9	36	76	13	103	25	2	1	70	1.11
486667--486758	18	4.9	18	72	23	75	27	3	1	68	1.12
486782--486807	9	2.9	9	100	0	52	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486914--486943	15	2.0	15	100	0	60	20	20	0	60	1.37
497000--497182	70	2.6	70	98	0	348	51	18	14	15	1.77
498433--498517	38	2.3	37	82	11	104	40	16	1	42	1.56
503051--503124	21	3.6	21	79	15	75	27	13	29	29	1.94
503128--503236	53	2.1	53	82	3	130	30	17	22	30	1.96
507197--507247	20	2.5	21	87	9	70	29	11	29	29	1.92
507216--507360	53	2.7	54	82	8	154	28	15	24	32	1.95
507989--508035	23	2.0	23	100	0	94	40	12	21	25	1.89
516253--516304	2	26.5	2	92	3	88	46	0	0	53	1.00
517446--517577	53	2.5	53	88	2	203	21	24	22	31	1.98

Tables:   1   2   3   4   5