genome.fa.s8155.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008155.1 Hibiscus syriacus cultivar Beakdansim tig00110721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  962042

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 595 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183594--183742	79	1.9	79	84	2	201	36	10	26	26	1.88
183719--183933	45	4.8	44	78	6	218	40	10	20	28	1.85
183680--183929	90	2.8	90	79	4	238	38	11	22	28	1.88
183717--183957	90	2.7	87	75	7	223	40	9	19	29	1.84
185946--186084	36	3.9	36	88	0	208	31	24	23	20	1.98
189502--189573	36	2.0	37	83	5	94	43	0	5	51	1.25
190380--190424	20	2.4	19	85	7	56	26	17	6	48	1.72
191146--191403	132	1.9	133	92	0	437	21	37	6	34	1.79
196398--196434	3	12.3	3	100	0	74	32	0	0	67	0.91
196500--196545	2	23.0	2	100	0	92	50	0	0	50	1.00
196570--196625	28	2.0	28	85	0	76	37	5	1	55	1.33
196609--196641	2	17.5	2	87	12	52	48	0	0	51	1.00
196609--196643	18	1.9	18	100	0	70	48	0	0	51	1.00
196762--196833	19	3.7	19	75	18	69	12	11	1	75	1.12
196850--196874	4	6.2	4	100	0	50	24	0	0	76	0.80
196968--197011	20	2.2	20	88	4	63	18	6	2	72	1.17
196986--197043	22	2.5	23	80	5	64	15	10	0	74	1.08
199618--199867	95	2.6	95	89	3	358	32	17	17	32	1.94
200831--201201	151	2.4	151	90	0	571	36	22	15	26	1.94
201283--201744	121	3.8	120	86	3	604	34	25	17	22	1.95
201762--201991	84	2.8	84	89	3	337	34	24	17	23	1.96
207612--207670	28	2.1	28	100	0	118	13	13	18	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211166--211200	13	2.6	14	90	4	54	45	0	11	42	1.40
214338--214375	3	12.7	3	88	0	58	31	5	0	63	1.17
214395--214443	20	2.3	21	86	6	64	12	10	0	77	0.99
214405--214509	26	3.9	25	72	18	77	15	10	1	72	1.20
214621--214673	25	2.2	24	83	6	72	15	7	1	75	1.11
219905--219944	2	20.0	2	94	0	71	47	0	0	52	1.00
222665--222722	2	29.0	2	100	0	116	50	0	0	50	1.00
225005--225165	64	2.5	64	83	3	200	32	18	22	26	1.97
225173--225210	20	1.9	20	94	0	67	31	18	23	26	1.97
226362--226398	17	2.1	18	85	14	51	45	2	16	35	1.61
226999--227023	10	2.5	10	100	0	50	40	0	12	48	1.40
230281--230384	45	2.3	45	81	3	129	34	19	20	25	1.96
236288--236323	17	2.1	18	94	5	65	61	11	0	27	1.30
236781--236827	23	2.0	23	91	0	76	29	14	8	46	1.74
237040--237098	18	3.4	18	67	21	54	18	6	23	50	1.70
237036--237098	33	1.9	33	93	0	108	19	6	22	52	1.68
240237--240387	64	2.3	63	84	8	180	33	19	17	29	1.94
244436--244487	19	2.7	19	96	0	95	34	15	21	28	1.94
244395--244552	83	1.9	83	83	7	205	34	18	17	29	1.94
248452--248602	64	2.3	63	84	6	178	33	19	16	29	1.94
250292--250366	35	2.1	35	82	0	87	42	18	2	36	1.65
252506--252597	18	5.4	18	71	23	92	16	31	29	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252524--252579	15	3.5	15	73	21	60	19	33	26	19	1.96
252503--252597	33	2.9	33	100	0	190	17	31	28	22	1.97
253411--253582	31	5.5	31	95	0	308	20	19	21	38	1.93
254025--254056	12	2.7	12	100	0	64	50	0	25	25	1.50
255020--255237	31	7.0	31	95	1	375	20	18	22	38	1.93
255718--255760	21	2.0	21	82	8	52	32	4	13	48	1.63
258937--258971	18	1.9	18	88	0	52	28	17	0	54	1.43
260261--260294	7	4.7	7	85	7	50	23	26	32	17	1.97
260262--260292	15	2.1	15	93	0	53	25	22	35	16	1.94
260291--260365	18	4.4	18	77	16	97	13	18	49	18	1.79
260269--260312	13	3.3	13	84	12	54	18	25	40	15	1.90
260284--260356	31	2.4	31	88	2	112	16	20	45	17	1.86
264142--264176	18	1.9	18	88	0	52	28	17	0	54	1.43
265495--265569	18	4.4	18	77	16	97	13	18	49	18	1.79
265473--265516	13	3.3	13	84	12	54	18	25	40	15	1.90
265488--265560	31	2.4	31	88	2	112	16	20	45	17	1.86
267326--267389	21	3.0	21	93	2	101	31	0	18	50	1.48
267704--267850	76	1.9	76	91	2	242	21	18	12	47	1.81
282205--282274	30	2.3	30	82	0	86	40	8	20	31	1.82
282967--283027	23	2.7	23	89	0	95	29	27	22	19	1.98
283138--283191	18	3.0	18	97	0	99	35	33	20	11	1.88
283594--283637	21	2.1	21	91	0	70	18	27	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287369--287429	23	2.7	23	86	0	86	27	27	24	19	1.99
287543--287579	18	2.1	18	95	5	67	35	35	16	13	1.88
287466--287782	62	5.2	63	62	23	167	36	23	14	25	1.93
287445--287799	121	2.9	121	98	0	674	35	24	14	24	1.94
287661--287696	18	2.0	18	100	0	72	33	33	22	11	1.89
289031--289074	21	2.1	21	91	0	70	18	27	25	29	1.98
290006--290053	23	2.0	25	88	8	73	20	25	25	29	1.99
290706--290765	12	5.1	12	76	10	61	18	16	25	40	1.91
293916--293966	22	2.3	22	90	6	77	9	23	1	64	1.34
294876--294911	16	2.2	16	100	0	72	55	11	16	16	1.68
295485--295563	2	39.5	2	100	0	158	50	0	0	49	1.00
297876--297925	15	3.1	17	69	19	52	34	0	8	58	1.28
305167--305207	19	2.2	19	100	0	82	36	19	21	21	1.95
307648--307790	64	2.2	63	80	10	157	27	20	24	27	1.99
307667--307827	65	2.5	65	81	5	175	27	18	22	31	1.97
307668--307877	65	3.2	64	75	15	166	26	18	23	31	1.97
309971--310009	13	3.1	13	88	3	53	48	2	7	41	1.45
316358--316406	19	2.7	17	84	9	53	26	20	28	24	1.99
316387--316495	57	1.9	56	85	5	148	26	20	23	29	1.99
316387--316512	57	2.2	55	81	10	139	26	19	23	29	1.99
318469--318558	29	3.0	30	78	10	78	41	5	18	34	1.74
321279--321330	22	2.5	20	84	6	59	30	15	25	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321226--321399	95	1.8	95	82	2	224	36	17	22	24	1.95
321374--321432	20	2.8	21	77	15	59	35	6	23	33	1.82
321775--321916	56	2.6	56	81	6	148	31	11	23	33	1.91
324634--324677	17	2.6	17	96	0	79	34	15	4	45	1.67
331699--331888	95	2.0	96	84	5	251	31	17	24	26	1.97
332245--332411	59	2.9	58	91	5	266	32	11	19	35	1.88
332786--333178	68	5.8	68	87	0	552	32	14	21	32	1.93
333154--333363	81	2.6	81	87	1	287	38	10	21	30	1.87
335847--335950	37	2.8	37	85	0	127	42	14	13	29	1.84
336366--336403	18	2.1	18	85	14	51	34	0	0	65	0.93
336366--336403	10	4.1	9	86	13	51	34	0	0	65	0.93
336516--336651	61	2.2	59	79	15	143	30	5	2	61	1.32
336637--336685	18	2.6	19	80	9	55	36	4	0	59	1.17
336678--336722	16	2.9	17	81	15	53	24	4	2	68	1.19
340691--340755	24	2.7	24	85	0	85	86	6	6	1	0.77
340691--340755	30	2.2	30	86	5	87	86	6	6	1	0.77
340691--340742	1	52.0	1	78	0	50	88	5	5	0	0.63
341804--341839	18	2.0	18	88	0	54	19	8	27	44	1.79
342352--343627	106	12.0	106	91	0	1969	34	25	18	22	1.96
343824--343880	28	2.0	28	100	0	114	29	28	17	24	1.97
344405--344509	37	2.8	37	82	0	120	40	14	13	31	1.84
344892--344938	21	2.2	21	77	7	51	27	0	4	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345201--345242	23	1.9	23	85	9	61	35	0	0	64	0.94
345126--345250	7	17.7	7	72	17	57	32	4	0	63	1.19
350445--350493	26	1.9	25	84	12	64	48	4	2	44	1.33
353806--353832	13	2.1	13	100	0	54	22	14	14	48	1.81
353968--354215	123	2.0	123	97	0	469	28	26	16	28	1.97
356156--356199	20	2.2	20	83	0	52	38	0	9	52	1.33
356194--356220	14	1.9	14	100	0	54	29	0	0	70	0.88
357888--357979	40	2.3	38	78	7	103	42	1	1	55	1.14
358550--358589	20	2.0	20	85	0	53	42	20	7	30	1.79
358692--358740	17	3.0	17	77	20	59	69	0	0	30	0.89

Tables:   1   2   3   4   5