genome.fa.s8155.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008155.1 Hibiscus syriacus cultivar Beakdansim tig00110721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  962042

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 595 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517980--518157	42	4.3	42	68	16	138	32	22	16	28	1.96
518081--518164	42	2.0	42	95	0	150	30	22	20	26	1.98
518152--518176	13	1.9	13	100	0	50	24	20	24	32	1.98
518378--518484	42	2.6	41	80	2	133	28	22	23	25	1.99
518200--518601	214	1.9	214	92	0	678	32	18	15	34	1.92
524649--524678	6	5.0	6	95	0	51	46	20	16	16	1.84
529046--529088	21	2.0	21	90	0	68	32	0	9	58	1.30
530627--530696	23	3.0	23	83	8	81	31	2	0	65	1.07
530646--530702	3	19.7	3	85	7	82	31	0	0	68	0.90
530649--530765	32	3.7	32	80	2	112	37	0	1	59	1.13
530848--530904	20	2.9	19	76	7	60	45	1	1	50	1.22
540335--540573	119	2.0	119	99	0	469	25	20	21	32	1.98
543717--543790	10	7.6	10	68	22	50	59	20	9	10	1.58
543724--543792	16	4.3	16	86	0	93	59	20	8	11	1.58
543721--543783	32	2.0	32	93	0	108	58	20	11	9	1.60
544427--544458	14	2.3	14	100	0	64	50	21	15	12	1.77
544383--544451	24	2.9	24	82	0	93	59	18	8	13	1.59
547433--547530	43	2.3	43	81	0	124	33	17	22	26	1.96
548196--548252	21	2.7	21	97	0	105	40	19	19	21	1.92
549769--549847	41	2.0	40	82	7	97	32	15	18	32	1.92
550692--550724	16	2.1	17	88	11	52	81	0	6	12	0.85
550807--550879	15	4.7	15	89	5	110	16	24	30	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551641--551694	26	2.1	26	85	0	72	29	7	18	44	1.77
552474--552503	2	15.0	2	100	0	60	50	0	0	50	1.00
553943--553984	3	14.0	3	90	9	68	66	0	0	33	0.92
554138--554847	76	9.4	76	94	1	1203	34	21	19	24	1.96
555523--555599	22	3.5	22	96	0	145	40	14	11	33	1.82
560173--560231	15	3.8	16	85	14	88	0	16	1	81	0.78
560173--560231	31	1.9	31	89	6	93	0	16	1	81	0.78
560537--560569	2	16.5	2	100	0	66	51	0	0	48	1.00
562757--562827	37	1.9	37	83	11	92	54	9	16	18	1.69
562818--562857	21	1.9	21	94	0	71	55	10	12	22	1.67
565695--565740	2	23.0	2	100	0	92	50	0	0	50	1.00
565809--565864	21	2.6	21	77	11	51	67	0	1	30	1.01
566124--566157	2	17.0	2	100	0	68	50	0	0	50	1.00
567592--567645	3	18.0	3	81	7	65	61	0	0	38	0.96
568969--569020	20	2.6	21	78	6	63	38	1	1	57	1.21
568936--569023	31	2.8	31	78	13	90	40	1	3	54	1.24
568936--569027	32	3.0	29	77	16	89	40	1	3	55	1.23
569462--569504	17	2.4	18	80	7	52	48	0	11	39	1.40
569748--569823	20	3.7	20	73	15	66	53	2	0	43	1.14
569749--569820	31	2.4	31	83	6	94	55	2	0	41	1.14
590035--590093	18	3.3	18	79	11	68	45	5	1	47	1.34
590103--590154	13	3.8	13	79	5	50	48	9	5	36	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590297--590355	27	2.2	27	87	6	84	44	0	27	28	1.55
590279--590380	46	2.2	47	85	3	143	44	0	28	27	1.55
590657--590703	21	2.2	21	100	0	94	27	34	19	19	1.96
590722--591059	21	16.2	20	91	1	410	20	23	21	34	1.97
590722--591059	42	8.1	42	92	2	531	20	23	21	34	1.97
590722--591059	63	5.4	63	91	2	540	20	23	21	34	1.97
591629--591653	6	4.2	6	100	0	50	0	16	48	36	1.46
591746--591949	21	9.7	21	92	2	329	34	22	22	21	1.97
592266--592312	24	1.9	25	86	4	69	55	4	4	36	1.39
592299--592357	32	1.9	32	83	10	79	45	0	5	49	1.24
592324--592377	28	2.0	28	85	7	76	48	1	5	44	1.37
592245--592382	2	72.5	2	66	19	55	47	2	5	44	1.37
592328--592403	38	2.0	40	84	10	104	48	3	6	40	1.48
592496--592539	22	2.0	22	86	0	61	47	6	4	40	1.50
592624--592663	14	2.9	14	92	0	62	45	30	0	25	1.54
592771--592888	20	6.3	20	60	25	51	43	8	8	39	1.66
592768--592846	37	2.2	36	81	4	97	43	8	8	39	1.67
592769--592934	57	2.9	56	84	7	210	42	9	7	40	1.65
592848--592881	13	2.5	13	90	4	50	47	8	2	41	1.50
592859--592912	24	2.3	23	84	6	65	40	7	5	46	1.55
593029--593213	31	5.8	30	72	22	126	41	5	3	49	1.42
593232--593288	16	3.6	16	86	13	91	49	0	3	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593228--593292	6	12.2	6	74	19	56	47	0	3	49	1.17
593229--593298	31	2.3	31	100	0	140	47	0	2	50	1.16
593768--593834	29	2.3	29	80	12	75	41	1	2	53	1.25
593937--594034	46	2.1	46	88	5	144	33	15	22	28	1.94
594026--594080	16	3.4	16	84	0	74	36	16	25	21	1.94
607088--607143	21	2.7	21	97	0	103	23	23	28	25	1.99
610048--610091	21	2.1	21	86	0	61	31	25	27	15	1.96
611750--611966	103	2.1	103	96	0	398	26	13	23	36	1.92
611977--612051	23	3.3	23	87	3	100	24	20	24	32	1.98
619543--619625	29	2.8	30	82	10	84	46	6	15	31	1.70
623450--623492	22	2.0	22	95	0	77	25	16	6	51	1.69
624216--624279	27	2.4	27	83	0	74	54	0	4	40	1.21
624254--624326	24	3.0	24	74	22	71	49	1	4	45	1.29
624237--624311	27	3.0	27	79	14	83	52	1	4	42	1.28
628431--628529	33	3.0	33	90	1	162	24	14	24	37	1.92
630061--630108	22	2.2	22	96	0	87	25	12	8	54	1.65
630224--630332	30	3.6	30	97	0	191	19	22	39	18	1.92
630507--630607	50	2.0	50	96	1	186	24	2	15	56	1.54
631820--631883	31	2.1	31	88	5	94	29	9	10	50	1.69
632030--632091	27	2.3	27	82	0	70	54	0	4	40	1.22
632049--632125	24	3.0	25	81	7	84	50	1	5	42	1.32
634063--634107	2	22.5	2	100	0	90	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639254--639394	71	2.0	71	86	8	200	51	7	12	29	1.66
639523--639708	2	95.5	2	64	25	62	44	4	4	46	1.42
639568--639708	18	7.3	19	69	14	83	45	4	4	46	1.42
639520--639654	40	3.3	41	81	13	138	44	4	4	46	1.43
640617--640681	24	2.7	24	87	0	103	33	21	20	24	1.97
641814--641854	18	2.3	18	86	0	55	26	17	2	53	1.56
643091--643130	20	2.0	21	85	14	57	42	5	7	45	1.54
643349--643387	19	2.1	19	95	0	69	20	38	15	25	1.92
643335--643497	65	2.5	65	85	3	222	30	26	15	26	1.96
644436--644479	18	2.5	17	82	7	61	54	27	0	18	1.44
644447--644483	18	2.0	19	94	5	67	59	27	0	13	1.35
652225--652387	65	2.5	64	83	3	211	27	15	26	29	1.96
652335--652385	19	2.7	19	85	8	70	25	15	35	23	1.94
652602--652643	20	2.1	20	86	8	59	47	7	2	42	1.43
655169--655256	24	3.7	24	83	6	97	36	21	18	23	1.95
656397--656431	18	1.9	18	88	0	52	28	17	0	54	1.43
659524--659613	28	3.1	29	79	14	98	18	1	5	74	1.07
659563--659619	6	9.7	6	83	12	66	15	1	1	80	0.87
659563--659626	12	4.9	13	77	19	62	14	3	1	81	0.89
659563--659648	18	4.8	19	72	17	69	15	3	2	79	0.98
659534--659650	40	2.9	40	81	7	112	18	2	3	75	1.06
659563--659648	30	2.9	30	83	6	79	15	3	2	79	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659598--659673	36	2.1	35	79	13	84	13	6	3	76	1.12
663899--663954	16	3.4	16	81	13	60	39	7	26	26	1.82
664278--664353	34	2.2	34	97	0	143	31	40	23	3	1.73
664267--664353	34	2.6	32	90	3	111	29	42	21	5	1.76
664532--664599	32	2.0	34	88	8	104	47	33	7	11	1.68
665346--665487	58	2.4	58	92	3	232	34	25	11	28	1.90
665463--665511	20	2.5	20	86	0	71	34	24	8	32	1.85
666060--666157	41	2.4	40	82	1	124	25	13	28	32	1.93
666055--666175	20	6.0	21	74	5	81	26	13	28	32	1.93
666260--666316	26	2.1	28	80	6	64	56	5	1	36	1.32

Tables:   1   2   3   4   5