genome.fa.s8193.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008193.1 Hibiscus syriacus cultivar Beakdansim tig00110812_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1025831

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 565 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811426--811479	24	2.2	24	93	0	90	40	20	18	20	1.91
811426--811493	24	2.8	24	84	0	64	38	20	17	23	1.93
812384--812428	21	2.1	21	87	0	63	37	17	26	17	1.93
813029--813082	25	2.2	24	80	3	63	37	9	0	53	1.33
816295--816341	2	23.5	2	100	0	94	51	0	0	48	1.00
817121--817475	179	2.0	179	100	0	710	39	10	19	30	1.86
827317--827403	45	1.9	45	88	4	131	32	16	17	34	1.92
842638--842695	25	2.1	28	75	21	77	31	17	6	44	1.75
842644--842695	25	2.1	25	96	0	95	28	15	7	48	1.73
846237--846261	10	2.5	10	100	0	50	60	12	12	16	1.60
846200--846286	24	3.7	24	78	7	88	62	13	10	13	1.55
846458--846512	22	2.4	22	85	11	67	58	0	12	29	1.35
846645--846714	32	2.2	33	87	5	99	27	12	22	37	1.91
850900--850991	42	2.2	41	84	9	116	23	21	26	28	1.99
850900--850991	21	4.4	20	78	11	89	23	21	26	28	1.99
856699--856747	19	2.7	17	84	9	53	26	20	28	24	1.99
863539--863652	24	4.8	24	82	6	144	22	14	21	41	1.90
868259--868372	24	4.8	24	82	6	144	22	14	21	41	1.90
869539--869626	33	2.7	33	84	3	117	27	13	22	36	1.92
873810--873847	17	2.2	17	100	0	76	10	23	47	18	1.79
873783--873820	7	5.6	7	81	6	51	23	28	28	18	1.98
881116--881170	19	2.9	19	83	5	67	29	30	25	14	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
884369--884424	2	28.0	2	100	0	112	0	50	0	50	1.00
884424--884455	2	16.0	2	100	0	64	50	0	0	50	1.00
893701--893745	22	2.0	22	95	0	81	40	8	31	20	1.83
901369--901557	30	6.3	30	96	1	337	30	23	23	22	1.99
902657--902701	21	2.1	21	87	0	63	15	24	28	31	1.96
910148--910188	8	5.2	8	82	5	57	34	0	29	36	1.58
910261--911258	128	7.9	128	91	3	1639	23	24	20	32	1.98
910261--911230	373	2.6	374	94	2	1660	22	24	20	32	1.98
911656--911755	33	3.0	34	83	2	139	39	3	4	54	1.35
912272--912361	21	4.3	21	83	10	121	22	26	31	20	1.98
914137--914193	17	3.4	17	74	11	55	59	1	0	38	1.08
914156--914225	33	2.1	34	82	12	83	62	5	0	31	1.18
915472--915528	23	2.5	23	85	0	78	42	5	15	36	1.70
915444--915606	87	1.9	87	90	0	263	41	12	14	32	1.82
919452--919487	15	2.4	15	100	0	72	22	8	30	38	1.83
919467--919851	197	1.9	197	89	3	587	34	14	16	34	1.89
919621--920832	194	6.3	198	76	12	1022	28	13	16	40	1.87
919889--920647	370	2.0	372	87	5	1090	27	13	17	41	1.87
920260--920903	196	3.3	197	85	7	806	28	13	16	41	1.86
921037--921095	18	3.3	18	73	0	55	49	16	3	30	1.63
921043--921095	12	4.4	12	78	0	61	49	18	3	28	1.65
921059--921106	24	2.0	24	84	8	62	50	12	6	31	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922355--922388	6	5.7	6	89	0	50	20	32	2	44	1.67
923194--923231	2	19.0	2	100	0	76	50	0	0	50	1.00
923562--923603	15	2.8	15	88	0	66	26	2	52	19	1.58
923970--925229	199	6.3	199	91	0	1909	28	14	15	42	1.86
923970--925229	397	3.2	397	91	0	1986	28	14	15	42	1.86
923970--925229	596	2.1	596	90	0	2002	28	14	15	42	1.86
925601--925648	18	2.6	19	86	6	71	54	12	2	31	1.49
929138--929270	19	6.7	19	70	10	77	35	15	3	45	1.62
929738--930515	182	4.3	180	84	5	987	27	15	12	43	1.83
929734--930515	365	2.1	363	86	7	1102	27	15	12	43	1.84
931847--931880	16	2.2	16	89	5	52	5	14	8	70	1.31
934893--934953	2	30.5	2	100	0	122	50	0	0	49	1.00
943154--943193	22	1.9	20	90	10	62	47	37	2	12	1.55
950218--950300	23	3.7	23	79	6	82	27	22	18	31	1.97
962110--962143	17	2.1	16	88	5	50	76	0	8	14	1.01
963898--964080	43	4.3	41	79	9	154	26	21	22	28	1.99
964466--964537	21	3.3	21	77	11	74	1	41	16	40	1.57
964503--964543	21	2.0	21	85	0	55	2	41	12	43	1.55
972411--972451	21	1.9	21	85	5	55	19	12	4	63	1.46
973604--973660	30	1.9	30	89	7	89	21	0	17	61	1.35
975223--975253	2	15.5	2	93	0	53	54	0	0	45	0.99
976099--976174	36	2.1	36	97	0	143	43	14	10	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980643--980672	15	2.0	15	100	0	60	13	46	26	13	1.80
981095--981170	36	2.1	36	97	0	143	43	14	10	31	1.79
983398--984383	106	9.3	106	96	0	1747	21	17	25	34	1.96
989278--989331	9	5.8	10	82	10	62	64	0	0	35	0.94
989277--989321	12	3.6	13	77	17	51	68	0	0	31	0.89
991568--991597	15	2.0	15	93	0	51	56	6	3	33	1.42
995813--995988	60	2.9	58	79	10	158	34	17	5	43	1.72
996472--996542	9	7.7	9	74	12	63	73	2	2	21	1.09
996472--996542	28	2.5	30	82	11	87	73	2	2	21	1.09
996668--996716	18	2.7	18	80	3	53	71	0	2	26	0.97
996603--996747	43	3.5	43	77	11	117	65	0	4	29	1.16
996660--996750	36	2.5	36	76	5	85	65	0	2	31	1.04
996737--996782	22	2.1	22	84	8	58	63	4	0	32	1.14
1008651--1008677	8	3.4	8	100	0	54	48	0	11	40	1.39
1008937--1008976	10	4.1	10	90	6	64	37	0	30	32	1.58
1008938--1008975	19	2.0	19	94	0	67	39	0	26	34	1.57
1014768--1014801	16	2.1	16	94	0	59	32	26	8	32	1.87
1016488--1016542	28	2.0	28	88	0	83	36	12	16	34	1.87
1019534--1020167	320	2.0	314	97	1	1196	37	15	17	29	1.91

Tables:   1   2   3   4   5

The End!