genome.fa.s8213.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008213.1 Hibiscus syriacus cultivar Beakdansim tig00110839_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2348840

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1057 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1827367--1827411	2	22.5	2	100	0	90	48	0	0	51	1.00
1827586--1827621	5	7.2	5	87	0	54	16	0	5	77	0.94
1832318--1832385	29	2.3	30	87	2	93	20	16	16	47	1.83
1832521--1832852	131	2.5	131	80	7	377	26	30	16	26	1.97
1833042--1833099	3	19.0	3	86	10	82	34	1	0	63	1.04
1833041--1833099	30	1.9	32	89	6	95	35	1	0	62	1.05
1833042--1833099	22	2.8	21	92	5	91	34	1	0	63	1.04
1834513--1834611	30	3.3	31	83	9	118	22	13	5	59	1.53
1834716--1834776	2	30.5	2	100	0	122	49	0	0	50	1.00
1834951--1834991	5	8.2	5	88	0	64	17	0	4	78	0.93
1836571--1836610	20	2.2	19	86	13	57	67	5	5	22	1.30
1838530--1838558	3	9.7	3	100	0	58	31	0	0	68	0.89
1838872--1839064	74	2.6	74	88	0	280	42	14	9	33	1.78
1844461--1844520	23	2.7	22	82	12	70	21	23	33	21	1.97
1844479--1844526	23	2.0	24	92	4	80	27	22	29	20	1.99
1851444--1851514	29	2.5	29	83	2	90	33	12	4	49	1.60
1851444--1851523	29	2.7	29	77	12	83	35	12	3	48	1.59
1854997--1855031	13	2.7	13	86	0	52	42	2	14	40	1.60
1855510--1855612	44	2.3	44	88	3	145	28	17	22	32	1.96
1855497--1855576	21	3.8	21	73	14	74	27	21	21	30	1.98
1872921--1873076	65	2.4	65	83	7	185	30	17	23	28	1.97
1875388--1875441	28	1.9	28	92	0	90	44	16	9	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1875573--1875628	7	7.7	7	90	6	85	12	14	1	71	1.23
1875573--1875629	15	3.9	15	86	4	89	12	14	1	71	1.21
1875573--1875629	22	2.6	23	88	8	91	12	14	1	71	1.21
1875573--1875628	29	1.9	29	92	0	94	12	14	1	71	1.23
1875768--1875848	3	27.0	3	92	5	137	33	1	0	65	1.01
1878037--1878071	3	11.7	3	100	0	70	34	0	0	65	0.93
1881536--1881589	26	2.0	27	82	10	67	53	11	7	27	1.63
1882036--1882416	43	8.8	43	82	6	360	36	22	22	18	1.95
1884716--1884749	16	2.1	16	89	10	52	41	32	11	14	1.82
1884775--1885547	386	2.0	386	95	0	1393	30	20	27	21	1.98
1887089--1887416	43	7.5	44	85	4	246	35	22	22	18	1.96
1887135--1887423	43	6.7	43	86	2	348	35	24	22	17	1.95
1887135--1887423	87	3.3	86	84	3	357	35	24	22	17	1.95
1887138--1887423	130	2.2	130	86	3	389	36	24	22	17	1.95
1889643--1889669	13	2.1	13	100	0	54	37	22	25	14	1.93
1891753--1891814	6	10.3	6	100	0	124	16	50	0	33	1.45
1895309--1895342	14	2.4	14	95	0	59	17	44	20	17	1.87
1895377--1895419	10	3.9	11	84	9	52	16	34	25	23	1.95
1895377--1895432	22	2.6	22	85	2	69	17	32	26	23	1.97
1897504--1897667	44	3.8	44	85	0	222	17	25	25	32	1.97
1897963--1898021	17	3.5	17	68	13	50	28	15	8	47	1.74
1898012--1898050	18	2.2	18	95	0	69	35	5	15	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1899769--1899817	19	2.7	17	84	9	53	26	20	28	24	1.99
1899786--1899893	45	2.4	46	89	4	157	30	20	20	28	1.97
1900585--1900634	25	1.9	24	84	15	64	60	12	4	24	1.49
1902635--1902712	23	3.5	22	77	8	86	24	23	26	25	2.00
1902635--1902697	21	2.9	22	80	4	74	22	25	25	26	2.00
1910819--1910877	17	3.5	17	68	13	50	28	15	8	47	1.74
1910868--1910912	18	2.6	18	82	3	56	31	4	13	51	1.61
1912943--1913138	44	4.5	44	85	3	218	34	23	21	19	1.96
1912949--1913157	88	2.4	87	82	4	242	34	23	22	19	1.96
1915763--1915803	20	2.0	20	95	0	73	39	7	19	34	1.80
1918702--1918753	24	2.2	24	82	0	59	50	17	11	21	1.77
1918758--1918830	12	6.2	11	72	24	60	41	21	16	20	1.90
1918725--1918819	24	4.0	24	87	5	122	41	20	16	22	1.91
1918758--1918830	24	3.1	24	83	16	91	41	21	16	20	1.90
1923486--1923537	24	2.2	24	82	0	59	50	17	11	21	1.77
1923509--1923603	24	4.0	24	84	5	113	41	20	15	23	1.90
1923509--1923603	48	2.0	48	87	8	140	41	20	15	23	1.90
1923542--1923616	12	6.4	11	72	23	55	41	21	16	21	1.90
1923542--1923616	24	3.2	24	80	16	86	41	21	16	21	1.90
1928840--1928882	17	2.5	17	76	0	50	48	13	11	25	1.77
1928872--1928913	17	2.5	17	84	0	57	47	4	14	33	1.65
1929842--1930247	54	7.5	54	86	0	544	29	18	19	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932869--1932925	5	11.0	5	76	14	53	70	1	5	22	1.17
1932869--1932925	11	5.5	10	74	14	53	70	1	5	22	1.17
1932872--1932930	22	2.7	22	79	7	59	67	1	8	22	1.26
1932896--1932929	11	3.3	11	88	12	54	76	0	5	17	0.98
1939358--1939752	54	7.4	53	82	2	488	31	19	18	29	1.96
1939362--1939748	160	2.4	160	86	3	519	31	19	18	29	1.96
1945920--1946391	54	8.8	54	83	1	547	31	17	17	32	1.94
1945934--1946387	213	2.1	216	88	2	655	31	17	18	32	1.94
1947169--1947212	20	2.1	21	83	4	54	47	27	4	20	1.69
1963221--1963285	24	2.7	24	78	0	67	20	7	16	55	1.65
1969524--1969576	26	2.1	26	89	3	81	39	30	9	20	1.84
1974321--1974359	20	2.0	20	100	0	78	12	10	5	71	1.28
1999686--1999743	18	3.1	18	83	11	80	29	12	10	48	1.73
2000282--2000316	13	2.7	13	95	0	61	34	20	8	37	1.83
2000273--2000324	26	2.0	26	84	0	68	32	21	13	32	1.92
2007039--2007081	18	2.3	19	80	11	54	55	0	6	37	1.27
2010376--2010534	55	2.9	55	89	0	239	30	20	20	28	1.98
2011575--2011967	196	2.0	197	98	0	770	31	14	27	27	1.95
2017166--2017348	55	3.4	54	88	3	260	30	19	18	31	1.96
2023636--2023975	80	4.3	78	77	4	324	39	17	16	27	1.90
2025816--2025844	14	2.0	15	93	6	51	27	0	0	72	0.85
2039873--2039929	29	2.0	29	83	13	73	26	5	10	57	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2040471--2040561	42	2.2	41	84	2	110	32	16	17	32	1.93
2046971--2047107	41	3.3	41	74	6	134	36	16	16	31	1.90
2047209--2047336	41	3.1	41	85	4	177	36	17	17	28	1.92
2062304--2062349	2	23.0	2	100	0	92	50	0	0	50	1.00
2065585--2065622	14	2.8	14	88	4	51	15	21	26	36	1.93
2079376--2079541	84	2.0	84	87	0	242	36	28	20	15	1.93
2080388--2080669	80	3.5	80	88	2	388	45	19	7	28	1.76
2081060--2081101	22	1.9	22	90	0	66	64	4	16	14	1.45
2084457--2084567	19	5.7	19	75	10	80	34	27	13	25	1.93
2084535--2084580	19	2.4	19	85	3	56	36	21	17	23	1.94
2085621--2085674	24	2.2	24	90	0	81	20	16	20	42	1.89
2088502--2088554	27	2.0	27	84	0	70	43	13	11	32	1.79
2088628--2088696	20	3.8	20	72	21	69	24	13	20	42	1.87
2088617--2088696	34	2.4	34	91	4	126	25	12	20	42	1.86
2088684--2088722	20	2.0	20	94	0	69	23	5	23	48	1.70
2088927--2088988	24	2.6	24	94	0	106	35	8	17	38	1.80
2090878--2090987	21	5.2	21	75	12	84	30	15	31	21	1.94
2090959--2091003	21	2.1	21	91	0	72	31	13	28	26	1.94
2091339--2091550	21	10.1	21	78	8	216	34	32	11	21	1.89
2091649--2091790	21	7.0	21	63	20	70	19	13	40	26	1.89
2091649--2091937	42	7.0	42	89	2	367	22	13	37	25	1.92
2093389--2093451	20	3.2	20	86	0	72	41	19	14	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2093417--2093454	20	1.9	20	100	0	76	31	21	13	34	1.91
2094102--2094146	20	2.2	20	88	0	63	28	17	24	28	1.97
2094462--2094491	15	2.1	14	93	6	51	63	0	0	36	0.95
2094892--2095249	179	2.0	179	100	0	716	36	18	8	35	1.83
2100182--2100338	57	2.8	57	86	2	226	38	21	3	36	1.70
2100176--2100342	29	5.9	29	85	2	198	38	22	2	35	1.70
2100344--2100396	22	2.4	22	93	0	88	9	22	49	18	1.76
2104196--2104244	19	2.7	17	84	9	53	26	18	30	24	1.98
2104196--2104358	64	2.5	62	77	8	159	29	15	26	28	1.96
2104378--2104417	21	1.9	21	94	0	71	22	15	30	32	1.94

Tables:   1   2   3   4   5   6   7   8   9