genome.fa.s8225.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008225.1 Hibiscus syriacus cultivar Beakdansim tig00110858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1890193

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262046--262102	23	2.5	23	94	0	96	42	15	19	22	1.89
262335--262895	85	6.8	84	87	4	748	28	24	21	24	1.99
262335--262895	166	3.4	166	87	4	735	28	24	21	24	1.99
263499--263698	74	2.8	68	81	9	220	44	3	5	46	1.43
263501--263750	37	6.9	36	73	13	185	45	4	6	44	1.47
263737--263860	32	3.7	33	71	10	99	43	2	7	46	1.44
263876--263941	3	22.7	3	79	14	68	27	4	0	68	1.09
263873--263945	13	5.6	13	72	16	62	26	4	0	69	1.06
264125--264154	16	1.9	15	93	6	51	20	40	26	13	1.89
272990--273044	19	2.7	19	86	11	65	21	30	20	27	1.98
275513--275564	19	2.7	20	81	3	61	25	34	19	21	1.96
278569--278613	21	2.1	21	87	0	63	31	28	24	15	1.96
279537--279661	31	4.0	31	90	2	189	20	20	22	37	1.94
282884--283147	132	2.0	132	96	0	492	33	17	15	34	1.91
284234--284297	2	32.0	2	100	0	128	50	0	0	50	1.00
284591--284621	16	1.9	16	93	0	53	41	0	6	51	1.27
284614--284655	22	1.9	22	85	0	57	26	2	14	57	1.50
286012--286082	29	2.4	29	83	4	90	36	8	16	38	1.80
290295--290340	22	2.1	21	88	4	65	73	0	0	26	0.83
292082--292131	24	2.1	23	85	3	64	76	2	4	18	1.04
292898--292957	3	19.7	3	79	3	57	60	3	3	33	1.30
292881--292963	21	3.8	21	76	16	62	61	2	2	33	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304718--304778	23	2.7	23	89	0	95	26	27	26	19	1.99
304794--305114	103	3.1	103	96	0	590	37	23	12	26	1.91
306290--306334	21	2.1	21	87	0	63	15	24	28	31	1.96
316119--316276	21	7.8	20	70	7	77	37	25	17	18	1.93
316244--316436	20	9.6	20	84	5	246	34	27	19	18	1.95
316814--316884	33	2.2	33	94	0	124	11	23	16	47	1.79
316964--317070	21	5.6	20	73	17	102	46	18	21	13	1.83
317025--317081	14	3.7	14	75	20	60	43	22	24	8	1.81
317018--317097	33	2.4	33	95	0	142	47	22	21	8	1.78
317093--317220	19	7.1	19	71	19	87	10	25	18	45	1.82
317115--317171	14	3.7	14	75	20	60	8	24	22	43	1.81
317098--317220	33	3.5	33	88	10	165	10	24	18	46	1.81
317156--317220	21	3.1	21	82	4	96	10	26	15	47	1.78
318901--319216	93	3.4	93	99	0	614	22	13	18	45	1.84
319332--319388	14	3.7	14	72	20	51	43	24	22	8	1.81
319346--319437	19	5.4	18	72	24	65	46	28	17	7	1.75
319314--319437	33	3.7	33	91	1	185	45	27	17	8	1.78
319363--319421	14	3.9	14	76	20	64	47	28	16	6	1.72
319433--319605	19	9.6	19	76	12	159	10	20	23	45	1.81
319455--319511	14	3.7	14	75	20	51	10	22	22	43	1.84
319433--319605	33	4.8	38	80	8	168	10	20	23	45	1.81
321528--321563	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321654--321741	19	4.8	19	82	14	123	47	15	22	13	1.81
321654--321760	53	2.0	52	98	1	205	45	16	24	13	1.83
321756--321934	33	5.2	33	74	15	166	13	23	17	45	1.84
321750--321920	53	3.2	53	95	1	308	14	23	17	44	1.86
321871--321942	33	2.2	33	87	2	99	15	22	18	44	1.86
323601--323625	12	2.1	12	100	0	50	0	28	0	72	0.86
323799--323845	24	2.0	24	87	8	69	38	21	14	25	1.92
324506--324694	20	9.4	20	85	2	200	17	17	25	38	1.92
324662--324759	21	4.8	20	75	10	81	21	19	20	38	1.93
324662--324760	42	2.4	43	77	11	100	21	19	21	38	1.94
325900--325950	8	6.6	7	95	4	57	50	1	0	47	1.12
325907--325951	2	23.0	2	95	4	83	51	0	0	48	1.00
327376--327409	14	2.4	14	95	0	59	50	2	5	41	1.42
335270--335335	7	8.9	7	79	9	60	48	0	0	51	1.00
335302--335335	7	4.9	7	100	0	68	55	0	0	44	0.99
335233--335308	34	2.2	34	92	0	125	38	0	0	61	0.96
335233--335322	34	2.6	34	87	3	101	41	0	0	58	0.98
340196--340220	2	12.5	2	100	0	50	52	0	0	48	1.00
345670--345712	21	2.0	21	81	0	50	30	30	25	13	1.94
345692--345842	66	2.3	67	89	4	225	28	28	26	16	1.97
346330--346623	149	2.0	149	97	0	561	28	15	19	36	1.93
352696--352738	21	2.0	21	81	0	50	30	30	25	13	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352718--352870	67	2.2	68	90	2	236	27	28	28	16	1.97
353349--353651	149	2.0	149	98	0	579	27	16	19	35	1.94
353631--353675	23	2.0	23	86	0	63	20	24	28	26	1.99
357185--357895	356	2.0	356	95	0	1287	26	22	19	31	1.98
362757--362821	24	2.7	23	81	9	69	55	10	10	23	1.65
366091--366117	12	2.2	12	100	0	54	29	7	7	55	1.55
366391--366429	18	2.2	18	86	4	53	61	2	5	30	1.31
367073--367131	32	1.9	31	82	6	75	44	11	15	28	1.82
372115--372149	16	2.3	16	90	9	56	48	0	0	51	1.00
372884--372912	13	2.1	14	93	6	51	41	10	0	48	1.37
373316--373364	15	3.3	15	80	11	57	46	2	0	51	1.12
394674--394739	22	2.9	23	82	6	64	46	0	0	53	1.00
394657--394714	24	2.4	23	83	11	64	53	0	0	46	1.00
394784--394867	26	3.0	29	76	18	88	44	0	1	54	1.07
394878--394922	23	2.0	23	86	0	63	53	2	2	42	1.25
395021--395070	19	2.4	22	83	12	70	62	0	0	38	0.96
395014--395077	22	3.0	20	80	13	65	60	0	0	39	0.97
395239--395272	14	2.4	14	90	0	50	32	14	14	38	1.87
395269--395307	20	2.0	20	84	0	51	33	17	7	41	1.79
395281--395370	15	6.1	15	82	7	103	32	18	8	40	1.82
395281--395370	29	3.0	30	85	6	112	32	18	8	40	1.82
399480--399532	20	2.7	20	79	5	63	45	30	9	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402280--402313	2	17.0	2	100	0	68	50	0	0	50	1.00
403356--403484	35	3.6	35	72	16	102	28	18	15	37	1.92
403341--403484	72	2.0	72	83	0	180	27	18	16	37	1.92
405222--405299	22	3.5	21	78	16	77	57	2	2	37	1.26
405555--405620	32	2.1	32	94	0	114	36	13	3	46	1.59
406140--406264	60	2.1	61	83	1	153	32	24	4	38	1.77
406395--406585	60	3.2	60	79	3	197	37	5	24	32	1.78
412388--412417	13	2.3	13	94	0	51	73	0	0	26	0.84
412704--412752	20	2.5	20	96	0	89	10	44	12	32	1.75
412931--412971	20	2.1	19	86	4	55	21	4	0	73	1.02
412987--413039	24	2.2	25	87	9	76	24	3	3	67	1.23
413781--413811	14	2.2	14	94	0	53	12	9	0	77	0.99
414721--414760	16	2.5	16	88	8	55	10	5	5	80	1.02
417299--417378	39	2.1	39	88	4	117	30	27	21	21	1.98
425017--425291	80	3.3	80	63	27	185	32	25	17	24	1.97
424920--425509	170	3.5	170	97	0	1117	33	24	17	24	1.96
426131--426179	20	2.5	20	96	0	89	10	44	12	32	1.75
426414--426466	24	2.2	25	87	9	76	24	3	3	67	1.23
427207--427237	14	2.2	14	94	0	53	12	9	0	77	0.99
430723--430802	39	2.1	39	88	4	117	30	27	21	21	1.98
439320--439377	20	2.9	20	94	0	98	46	5	20	27	1.72
439532--439618	37	2.4	37	94	5	151	44	5	0	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441509--441549	18	2.3	19	80	20	52	68	7	0	24	1.15
442871--442935	32	2.0	32	93	0	112	30	27	10	30	1.91
443288--444480	105	11.4	105	93	0	1917	22	18	25	32	1.97
445299--445329	11	2.7	11	95	5	53	0	0	9	90	0.46
455978--456018	18	2.3	19	80	20	52	68	7	0	24	1.15
458473--458507	18	1.9	18	94	0	61	54	2	2	40	1.30
459080--459105	13	2.0	13	100	0	52	7	7	0	84	0.77
463021--463070	22	2.3	22	92	0	82	30	24	22	24	1.99
473220--473318	33	3.0	33	86	1	137	46	12	7	34	1.68
473306--473354	21	2.4	21	86	6	75	46	6	14	32	1.69

Tables:   1   2   3   4   5   6   7   8   9   10