genome.fa.s8225.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008225.1 Hibiscus syriacus cultivar Beakdansim tig00110858_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1890193

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1082 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473791--473901	53	2.1	53	98	1	215	35	5	22	36	1.77
475660--475684	12	2.1	12	100	0	50	20	16	16	48	1.82
477504--477566	31	2.1	31	82	5	76	53	9	1	34	1.43
485642--485687	25	1.9	23	91	8	74	43	8	0	47	1.34
486227--486260	9	3.9	9	84	7	52	35	0	2	61	1.11
486226--486264	17	2.4	17	95	4	71	33	0	5	61	1.18
488492--488535	13	3.4	13	80	0	52	15	2	13	68	1.31
488568--488641	34	2.2	35	80	11	91	21	2	13	62	1.44
488577--488647	34	2.1	34	86	5	99	18	2	12	66	1.37
492662--492698	18	2.0	19	89	5	58	37	0	0	62	0.96
493728--493766	13	2.9	13	81	7	51	33	28	15	23	1.95
495228--495256	11	2.6	11	100	0	58	41	0	6	51	1.28
505738--505770	12	2.8	12	95	0	57	18	24	21	36	1.95
510149--510207	24	2.5	24	83	5	75	23	20	16	38	1.92
513273--513330	15	3.9	15	78	13	66	41	6	18	32	1.78
513524--513565	21	2.0	22	90	4	68	42	0	2	54	1.13
513554--513623	33	2.2	33	82	9	85	47	0	5	47	1.26
513665--513727	23	2.7	23	77	5	63	47	1	1	49	1.20
513703--513740	11	3.5	11	82	10	51	52	0	0	47	1.00
513703--513781	20	4.1	20	70	13	58	46	1	0	51	1.08
513711--513889	30	5.9	30	70	17	122	48	1	0	49	1.12
513702--513861	60	2.7	58	78	14	166	46	1	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513829--513872	22	2.0	23	86	4	63	54	0	0	45	0.99
513744--513880	31	4.5	31	75	16	101	47	0	0	51	1.11
514069--514178	42	2.6	43	95	1	195	49	20	13	17	1.80
520342--520426	42	2.0	42	100	0	170	35	4	21	38	1.74
521061--521112	20	2.6	21	81	9	63	26	36	13	23	1.92
521102--521189	20	4.4	20	75	11	72	40	25	14	19	1.89
521182--521269	20	4.3	20	80	7	88	39	25	17	18	1.91
521101--521230	60	2.2	61	81	6	158	40	24	16	19	1.91
521182--521269	40	2.2	41	85	6	117	39	25	17	18	1.91
521216--521308	20	4.7	19	78	4	71	37	23	12	25	1.91
521465--521502	16	2.5	15	84	12	51	28	5	0	65	1.14
522097--522130	12	2.8	12	90	0	50	55	29	0	14	1.40
522256--522309	24	2.2	24	93	0	90	20	18	20	40	1.91
524537--524583	12	3.9	12	82	0	58	55	25	2	17	1.53
524536--524570	6	5.8	6	86	0	52	60	20	2	17	1.49
525013--525152	65	2.2	65	96	1	255	50	17	1	30	1.55
526530--526605	21	3.6	21	74	13	75	23	21	31	23	1.98
527897--528003	57	1.9	57	82	5	137	28	17	22	30	1.97
528426--528473	21	2.3	21	100	0	96	16	47	0	35	1.47
540089--540154	28	2.4	28	97	0	123	42	13	19	24	1.87
547178--547238	23	2.7	23	81	0	77	31	24	27	16	1.96
549585--549635	25	2.1	24	85	10	68	17	19	0	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552147--552215	23	3.0	23	82	0	93	33	26	23	17	1.96
553628--553678	19	2.7	19	87	0	84	25	23	15	35	1.94
555580--555638	22	2.7	22	86	0	82	20	15	42	22	1.89
555751--555854	20	5.2	20	81	2	127	18	13	25	42	1.87
555754--555917	40	4.1	40	77	15	137	20	12	23	43	1.86
555845--555920	20	3.8	20	96	0	134	23	13	21	42	1.88
555848--555935	20	4.4	20	94	0	122	23	14	20	40	1.90
559465--559507	3	14.3	3	100	0	86	0	32	0	67	0.91
563703--563746	22	2.0	22	82	8	54	29	25	6	38	1.81
565352--565588	56	4.2	55	82	4	276	31	19	10	38	1.86
571186--571222	13	2.8	13	91	0	65	21	16	18	43	1.88
572449--572474	13	2.0	13	100	0	52	23	15	7	53	1.67
573126--573237	51	2.2	50	77	4	125	44	15	12	27	1.82
576297--576343	22	2.1	22	100	0	94	48	10	12	27	1.74
576508--576594	44	2.0	44	86	0	120	24	20	24	31	1.98
577579--577647	35	2.0	35	91	5	113	44	15	4	34	1.67
586028--586073	3	15.3	3	100	0	92	32	0	0	67	0.91
590542--590598	29	2.0	29	100	0	114	36	0	21	42	1.53
595900--595937	15	2.5	15	100	0	76	31	18	7	42	1.79
597272--597319	23	2.1	23	92	0	78	39	6	18	35	1.76
597235--597394	87	1.8	87	95	0	293	40	11	14	33	1.82
604819--605355	201	2.7	201	96	1	1013	31	17	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607488--607531	21	2.1	21	91	0	70	15	31	11	40	1.83
607614--607646	15	2.2	15	94	0	57	12	60	6	21	1.53
607934--607984	24	2.2	24	86	6	70	49	1	0	49	1.12
609717--609762	20	2.3	19	78	10	56	23	19	6	50	1.71
614407--614450	21	2.1	21	86	0	61	43	11	29	15	1.82
614484--614549	33	2.0	33	93	0	114	30	0	46	22	1.52
617187--617227	2	20.5	2	100	0	82	48	0	0	51	1.00
617536--617632	30	3.2	30	82	2	115	35	28	18	17	1.94
617593--617720	31	4.1	31	74	6	114	35	19	16	28	1.93
621395--621522	31	4.1	31	75	6	123	35	19	17	28	1.94
623081--623755	201	3.4	201	95	0	1163	35	13	17	32	1.90
625207--625252	18	2.6	18	85	0	56	41	4	30	23	1.74
625213--625252	12	3.3	12	92	0	62	40	5	32	22	1.76
629177--629224	23	2.1	23	84	0	60	37	12	10	39	1.77
629177--629350	87	2.0	86	90	1	276	36	12	10	40	1.79
629258--629305	23	2.1	23	88	0	69	39	16	8	35	1.79
629438--629464	4	6.8	4	100	0	54	77	0	0	22	0.76
632782--632858	31	2.5	30	81	6	84	55	10	7	25	1.60
635203--635274	21	3.6	21	66	22	64	50	1	1	47	1.18
635209--635282	38	1.9	38	97	0	139	52	2	1	43	1.23
637236--637300	6	10.8	6	89	0	85	4	20	60	15	1.53
647469--647760	36	8.0	36	88	4	397	17	28	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648785--648855	36	2.0	36	100	0	142	36	28	19	15	1.92
652371--652447	21	3.8	20	74	17	70	25	33	22	18	1.96
654424--654492	23	3.0	23	89	0	102	26	26	27	20	1.99
654507--654718	102	2.1	103	94	2	374	37	23	13	25	1.92
656045--656098	20	2.6	21	94	5	92	20	20	25	33	1.97
662036--662070	17	2.1	17	88	0	52	40	5	2	51	1.40
662292--662339	17	2.9	17	75	12	55	41	0	0	58	0.98
662791--663160	183	2.0	184	99	0	733	24	21	24	28	1.99
670577--670671	27	3.6	27	94	2	167	42	15	12	29	1.84
674148--674242	27	3.6	27	91	2	149	42	15	12	29	1.84
683054--683083	15	2.1	14	93	6	51	33	36	16	13	1.88
688752--688856	55	1.9	55	92	3	176	27	26	19	26	1.99
696602--696639	19	2.0	20	85	15	53	5	34	0	60	1.19
697611--697670	21	2.8	22	92	2	95	21	26	25	26	2.00
698172--698216	11	4.1	11	82	0	54	26	15	28	28	1.96
698209--698254	22	2.1	22	91	0	74	21	23	28	26	1.99
698644--698692	25	2.0	23	81	14	55	32	2	18	46	1.60
703508--703545	19	2.0	20	85	15	53	5	34	0	60	1.19
704517--704580	21	3.0	21	88	4	101	23	26	23	26	2.00
705106--705150	22	2.0	22	95	0	81	20	22	31	26	1.98
712272--712323	23	2.4	22	80	6	70	17	19	44	19	1.87
722080--722662	291	2.0	291	98	0	1139	39	21	11	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724633--724699	22	3.0	22	75	2	62	49	5	22	22	1.71
726288--726507	76	2.9	76	85	1	307	33	12	10	43	1.77
726440--726620	100	1.8	100	88	0	281	32	11	10	45	1.75
726540--726696	76	2.1	76	87	0	224	31	12	10	45	1.76
726364--726719	176	2.0	176	86	2	500	32	11	10	44	1.75
726982--727145	72	2.3	70	83	5	213	37	9	7	46	1.64
729900--729980	41	2.0	41	95	0	144	28	12	19	39	1.88
736210--736348	21	6.7	21	74	3	138	22	17	25	34	1.96
736206--736324	41	2.9	41	93	0	202	21	19	23	36	1.95
736231--736299	20	3.4	20	72	4	66	14	23	23	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10