Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: VEPZ01008236.1 Hibiscus syriacus cultivar Beakdansim tig00110882_pilon, whole genome shotgun sequence Parameters: 2 7 7 80 10 50 1000 Length: 1100419

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 612 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15384--15424
2
20.5
2
100
0
82
48
0
0
51
1.00
20957--21001
23
1.9
24
86
13
67
80
15
4
0
0.87
20958--21010
26
2.0
27
88
3
81
79
15
5
0
0.91
32639--32697
21
2.8
21
84
2
82
23
32
27
16
1.96
34246--34299
18
3.0
18
81
7
65
46
24
27
1
1.63
36209--36267
20
3.0
20
72
18
61
28
27
18
25
1.98
36209--36267
18
3.1
19
74
18
59
28
27
18
25
1.98
38055--38289
60
3.9
58
79
8
240
37
5
23
32
1.79
38055--38289
119
2.0
120
84
5
307
37
5
23
32
1.79
40394--40596
41
5.0
42
88
7
296
20
16
24
38
1.92
40394--40596
80
2.5
82
92
5
342
20
16
24
38
1.92
40394--40614
121
1.8
120
86
8
324
20
16
23
38
1.93
40762--40813
20
2.6
20
96
0
95
40
25
25
9
1.85
40802--40855
21
2.6
21
96
0
99
29
27
16
25
1.97
41433--41507
2
38.5
2
94
5
136
48
0
0
52
1.00
51505--51565
3
20.0
3
83
3
68
59
1
0
39
1.08
51721--52481
76
10.0
76
96
0
1364
34
21
21
22
1.96
53157--53210
21
2.5
22
93
6
101
38
14
11
35
1.82
55913--56258
83
4.2
83
96
0
611
36
21
13
28
1.92
58515--58564
17
2.7
18
84
9
57
2
18
0
80
0.82
63203--63270
17
4.0
17
79
7
68
61
1
0
36
1.05
63203--63254
20
2.7
20
85
11
72
61
1
0
36
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63192--63267
9
8.0
10
73
15
56
64
1
1
32
1.10
65481--65550
3
23.0
3
85
2
77
58
1
0
40
1.07
66165--66197
15
2.2
15
89
10
50
18
15
3
63
1.43
68387--68436
20
2.5
20
78
12
59
40
2
2
56
1.22
68354--68440
31
2.8
31
77
10
88
40
1
4
54
1.29
69165--69251
31
2.8
29
80
13
93
52
3
1
42
1.25
69169--69218
19
2.5
20
84
9
59
54
2
2
42
1.23
69586--69628
21
2.0
21
86
0
59
39
9
25
25
1.85
69607--69652
15
3.1
15
81
6
67
43
6
19
30
1.76
69949--70011
23
2.7
23
85
5
72
47
0
1
50
1.10
69971--70011
12
3.4
12
81
18
50
46
0
0
53
1.00
69985--70072
30
3.0
28
71
19
70
53
1
0
45
1.07
73024--73061
18
2.1
18
90
0
58
42
26
5
26
1.76
73897--73957
31
2.0
31
84
12
83
32
6
9
50
1.61
94264--94348
34
2.5
34
98
0
161
37
1
29
31
1.65
96743--96788
2
23.0
2
100
0
92
50
0
0
50
1.00
105799--105869
18
3.9
18
90
0
115
19
21
33
25
1.97
108847--108912
20
3.0
24
76
12
61
31
24
19
24
1.98
122679--123036
41
8.6
41
72
12
194
33
18
17
29
1.95
122679--122934
122
2.0
125
81
8
290
34
17
17
29
1.94
123557--123596
21
1.9
21
94
0
71
15
40
10
35
1.80
126554--126593
16
2.5
16
91
0
62
40
22
2
35
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127049--127112
21
3.0
21
95
0
110
20
42
4
32
1.73
128768--128805
18
2.1
19
90
5
60
47
2
2
47
1.30
139693--139761
28
2.4
29
95
4
131
28
10
23
37
1.87
144262--144290
14
2.0
15
93
6
51
41
6
34
17
1.76
146565--146617
19
2.8
19
97
0
97
30
15
26
28
1.96
147451--147504
21
2.6
21
87
0
90
20
25
24
29
1.99
149832--149869
2
19.0
2
100
0
76
50
0
0
50
1.00
150698--150788
19
4.8
19
94
0
155
35
16
20
27
1.94
151720--151755
13
2.5
15
82
17
58
44
5
22
27
1.75
158191--158250
23
2.6
23
81
0
57
26
15
13
45
1.83
160518--160649
59
2.2
59
86
9
180
31
15
18
34
1.93
163874--163901
13
2.2
13
100
0
56
39
14
14
32
1.86
164122--164224
3
33.7
3
82
7
127
38
0
0
61
0.96
164605--164639
14
2.4
14
90
4
52
77
0
22
0
0.78
165617--165665
23
2.1
23
84
3
62
42
2
0
55
1.11
177020--177085
1
66.0
1
72
0
51
86
1
12
0
0.64
177019--177083
7
9.0
7
83
12
71
84
1
13
0
0.69
177019--177085
15
4.6
14
83
9
73
85
1
13
0
0.68
177031--177080
4
13.8
4
84
16
65
84
0
16
0
0.63
177020--177085
11
6.4
10
89
8
89
86
1
12
0
0.64
177019--177086
26
2.6
26
84
9
86
83
1
14
0
0.71
179360--179579
114
1.9
114
88
3
336
34
15
19
30
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
181553--181758
54
3.9
53
83
7
233
39
15
21
24
1.91
182106--182185
22
3.6
22
87
0
115
33
15
11
40
1.82
182618--183538
113
8.2
113
84
6
1163
37
14
18
29
1.90
182618--183538
229
4.1
225
89
3
1299
37
14
18
29
1.90
183487--183571
31
2.5
33
81
12
102
50
9
20
20
1.75
183544--183800
124
2.1
122
81
5
288
42
15
17
24
1.88
183936--184035
3
32.7
3
78
7
94
42
0
0
58
0.98
183990--184032
19
2.3
19
91
0
68
41
0
0
58
0.98
184416--184448
13
2.5
13
90
0
57
78
0
21
0
0.75
185421--185469
23
2.1
23
84
3
62
42
2
0
55
1.11
188269--188320
20
2.6
20
96
0
95
9
23
23
44
1.82
188333--188375
22
2.0
22
95
0
77
16
16
27
39
1.90
188485--188522
6
6.5
6
90
3
60
31
50
15
2
1.58
189132--189247
22
5.4
22
83
6
166
37
25
18
18
1.94
189239--189286
20
2.4
20
92
0
78
45
20
20
12
1.83
192354--192434
32
2.5
33
82
8
85
55
4
4
34
1.43
198627--198670
18
2.4
19
81
7
56
68
4
9
18
1.34
200341--200378
13
2.7
14
84
12
51
2
21
2
73
1.07
200392--200416
7
3.6
7
100
0
50
0
12
0
88
0.53
201505--201560
20
2.8
20
91
0
94
42
8
17
30
1.80
201770--201812
18
2.4
19
84
7
54
67
4
9
18
1.36
212934--212979
12
4.0
12
86
5
51
69
0
0
30
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
212942--212970
12
2.4
12
100
0
58
72
0
0
27
0.85
213866--213898
2
16.5
2
100
0
66
51
0
0
48
1.00
218513--218547
16
2.1
17
89
5
54
0
40
0
60
0.97
224263--224327
16
4.0
16
78
11
69
41
1
0
56
1.08
226134--226208
30
2.4
31
77
6
80
29
30
24
16
1.96
226087--226208
62
2.0
62
82
9
151
28
29
25
16
1.97
231252--231336
30
2.7
33
75
17
83
23
27
29
20
1.99
235410--235448
19
2.0
20
85
5
53
38
20
7
33
1.81
236912--237016
19
5.2
19
80
13
102
36
3
26
33
1.75
237451--237599
21
7.2
21
66
7
108
20
16
26
36
1.93
237464--237578
20
5.7
20
68
4
77
22
17
26
33
1.96
237451--237601
41
3.7
41
93
0
257
21
15
26
36
1.93
237628--237700
20
3.5
20
71
12
58
34
20
19
26
1.96
239247--239641
196
2.0
199
97
1
760
32
19
12
34
1.90
243988--244166
42
4.3
42
92
0
304
19
21
24
35
1.96
244874--245013
42
3.4
42
95
2
239
34
22
20
22
1.97
244874--245038
21
8.0
21
76
11
153
33
22
21
22
1.97
245047--245099
21
2.5
21
84
0
70
20
20
28
30
1.98
245924--245948
11
2.3
11
100
0
50
32
8
44
16
1.76
248132--248172
21
2.0
21
85
0
55
63
0
2
34
1.08
249988--250047
2
30.5
2
96
3
113
50
0
0
50
1.00
251302--251362
30
2.0
30
90
6
97
40
4
11
42
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
255354--255438
20
4.1
20
76
10
80
23
35
24
16
1.95
257675--257739
30
2.2
30
97
0
121
36
0
36
26
1.57
257834--257894
30
2.0
30
90
6
97
40
4
11
42
1.62
259837--260020
41
4.5
40
74
15
155
28
16
22
32
1.96
259788--259981
82
2.4
82
83
4
257
29
14
23
31
1.95
259950--260049
41
2.4
41
89
0
155
25
18
18
39
1.92
263494--263913
85
5.0
85
82
6
462
25
22
17
34
1.96
263478--263909
42
10.2
42
77
7
374
25
22
18
33
1.96
266996--267020
2
12.5
2
100
0
50
48
0
0
52
1.00
277874--277922
3
16.7
3
95
4
91
65
0
0
34
0.93

Tables:   1   2   3   4   5   6