genome.fa.s8236.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008236.1 Hibiscus syriacus cultivar Beakdansim tig00110882_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1100419

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 612 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835247--835467	121	1.8	121	90	0	352	30	24	18	25	1.98
835469--835952	84	5.8	84	79	4	438	31	21	18	27	1.97
835469--835959	168	2.9	166	83	3	581	31	21	18	27	1.97
841939--841976	16	2.4	16	82	4	51	63	0	5	31	1.17
841907--841967	24	2.6	22	84	7	68	63	1	4	29	1.24
842651--842750	35	2.8	36	86	6	130	31	16	15	38	1.89
843260--844067	98	7.9	107	82	8	538	20	21	25	32	1.97
843755--843924	55	3.3	54	68	21	175	17	23	28	31	1.97
843808--843966	43	3.4	43	68	21	131	15	23	27	33	1.95
844564--844648	37	2.3	37	85	4	109	42	14	21	22	1.88
844599--844764	65	2.6	65	94	1	289	36	12	19	31	1.88
844664--845102	102	4.3	102	92	0	711	36	12	19	30	1.89
844729--845003	37	7.9	36	66	20	156	37	13	20	29	1.90
844564--844881	167	1.9	169	90	1	514	37	12	20	30	1.89
845035--845137	36	2.9	36	82	1	127	37	12	21	28	1.90
845996--846051	22	2.5	22	88	0	85	28	10	25	35	1.89
846666--846714	20	2.4	21	83	6	66	0	16	8	75	1.03
846689--846731	22	2.0	23	86	9	63	0	20	4	74	1.00
851324--851367	2	22.5	2	90	4	72	54	0	0	45	0.99
851386--851422	15	2.4	16	82	8	51	62	0	5	32	1.18
851581--851667	11	7.3	11	70	21	50	59	1	3	35	1.22
852111--852179	35	1.9	35	85	5	93	28	13	15	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
858970--858998	12	2.5	12	94	5	51	6	0	24	68	1.13
863598--863680	29	2.8	29	92	1	139	43	9	14	32	1.78
868356--868438	29	2.8	29	92	1	139	43	9	14	32	1.78
870457--870486	15	2.0	15	93	0	51	36	0	10	53	1.35
876094--876121	2	14.0	2	100	0	56	50	0	0	50	1.00
878449--878485	3	12.3	3	100	0	74	35	0	0	64	0.94
879256--879286	16	1.9	16	93	0	53	64	0	32	3	1.09
882169--882194	7	3.7	7	100	0	52	15	15	0	69	1.20
885135--885184	11	4.7	11	76	16	52	82	0	16	2	0.77
885134--885174	5	7.8	5	84	10	55	82	0	17	0	0.66
885118--885184	16	4.2	16	83	11	75	79	0	19	1	0.82
885118--885174	21	2.5	22	86	13	73	78	0	21	0	0.74
887341--887560	114	1.9	114	88	0	332	32	15	21	30	1.94
889999--890052	21	2.5	22	87	6	92	33	11	14	40	1.82
890734--891093	76	4.7	76	97	0	684	23	19	21	34	1.96
891218--891581	76	4.8	76	96	0	665	23	18	21	35	1.96
890604--891963	488	2.8	485	95	1	2425	27	17	18	36	1.93
891703--891963	76	3.4	76	94	1	441	23	19	21	35	1.96
892098--892134	3	12.3	3	100	0	74	35	0	0	64	0.94
893038--893096	16	3.6	16	72	17	57	32	10	5	52	1.57
894236--894273	20	2.0	20	84	5	51	68	7	10	13	1.39
901851--901914	31	2.1	31	90	0	101	51	1	1	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901862--901984	39	3.2	38	71	24	96	44	2	3	49	1.31
905501--905543	20	2.0	22	86	8	63	44	2	0	53	1.13
905653--905695	18	2.2	20	84	12	54	34	2	0	62	1.08
909585--909637	27	2.1	26	82	10	65	64	3	3	28	1.28
911837--911876	20	2.0	21	85	5	55	27	20	22	30	1.98
912990--913479	124	3.9	124	86	4	637	35	15	17	31	1.91
914754--914794	16	2.6	16	100	0	82	19	12	17	51	1.76
922203--922257	27	2.0	27	96	0	101	40	12	9	38	1.75
928935--929075	64	2.2	63	77	7	151	32	18	22	26	1.97
929063--929120	20	2.6	22	89	10	84	31	20	22	25	1.98
933101--933204	45	2.3	44	80	6	111	34	19	20	25	1.96
933195--933252	24	2.4	24	100	0	116	36	18	20	24	1.95
939613--939655	19	2.3	19	96	4	79	48	9	18	23	1.76
939829--939868	20	2.0	21	95	5	73	17	22	35	25	1.95
941177--941201	2	12.5	2	100	0	50	52	0	0	48	1.00
941249--941298	25	2.0	25	100	0	100	24	24	8	44	1.80
945772--945976	108	1.9	108	84	2	277	24	16	10	48	1.77
953537--953601	21	3.0	21	77	8	60	56	1	0	41	1.08
960422--960454	17	1.9	17	88	11	50	57	18	9	15	1.63
968860--968892	5	6.8	5	93	6	59	21	57	21	0	1.41
975116--975223	54	2.0	54	98	1	209	40	12	18	28	1.86
975623--975675	26	2.0	26	100	0	106	18	32	30	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980334--980423	45	2.0	45	97	0	171	37	7	20	34	1.81
981021--981068	9	5.0	9	76	14	51	14	18	33	33	1.91
983580--983644	12	5.4	12	74	7	60	18	10	18	52	1.74
983576--983648	24	3.0	24	85	0	110	21	9	17	50	1.74
985023--985113	45	2.0	45	95	0	164	39	7	18	34	1.80
985770--985820	18	2.6	20	90	9	79	19	43	21	15	1.88
987153--987196	18	2.4	18	96	0	79	43	4	18	34	1.70
988199--988267	12	5.8	12	74	6	52	15	14	18	50	1.78
988203--988269	24	2.9	23	88	2	98	16	13	17	52	1.75
989429--989518	45	2.0	45	97	0	171	37	7	20	34	1.81
992578--992683	48	2.3	47	84	10	132	21	13	16	49	1.79
992610--992679	12	5.8	12	73	6	52	18	12	18	50	1.78
992611--992683	24	3.0	24	83	0	101	20	10	17	50	1.76
993328--993833	255	2.0	252	98	1	978	27	19	24	28	1.98
994429--994482	26	2.1	26	92	0	90	22	11	22	44	1.84
994435--994489	26	2.1	26	89	0	83	21	10	23	43	1.84
994767--994941	60	2.9	59	77	5	172	33	20	5	41	1.74
1002762--1002942	51	3.5	53	89	4	289	35	15	16	32	1.90
1004945--1004969	13	1.9	13	100	0	50	72	0	0	28	0.86
1005794--1005842	14	3.6	14	76	18	50	53	2	0	44	1.12
1005972--1006064	7	13.4	7	73	5	55	41	33	2	22	1.66
1005928--1006366	164	2.7	162	84	5	523	43	22	6	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006299--1006343	14	3.2	14	83	0	63	46	28	0	24	1.53
1006303--1006356	21	2.6	21	84	0	63	48	25	1	24	1.61
1007256--1007288	17	1.9	17	93	0	57	15	18	39	27	1.90
1007257--1007301	17	2.6	17	85	3	54	20	17	33	28	1.95
1008401--1008444	21	2.1	21	82	0	52	31	15	43	9	1.79
1015258--1015306	19	2.7	17	84	9	53	26	20	28	24	1.99
1015258--1015437	64	2.8	63	80	9	186	25	18	25	30	1.98
1015389--1015421	17	1.9	17	93	0	57	15	18	39	27	1.90
1015390--1015434	17	2.6	17	85	3	54	20	17	33	28	1.95
1018011--1018110	17	6.2	17	69	19	79	27	16	28	29	1.97
1018032--1018135	11	9.6	11	66	15	56	29	19	23	27	1.98
1017997--1018124	63	2.0	63	93	1	220	28	17	24	29	1.97
1018161--1018221	31	2.0	31	93	0	104	21	13	21	44	1.86
1018323--1018363	2	21.0	2	95	5	75	51	0	0	48	1.00
1028498--1028537	21	2.0	21	85	14	57	40	2	0	57	1.12
1028544--1028599	27	2.1	27	90	6	87	57	17	3	21	1.55
1029697--1029742	24	1.9	24	86	8	67	41	32	6	19	1.77
1042197--1042240	19	2.3	20	80	11	56	56	4	9	29	1.50
1042525--1042835	111	2.8	111	96	0	559	36	7	11	45	1.67
1044395--1044459	33	2.0	33	96	0	121	13	40	18	27	1.89
1044747--1044797	21	2.4	21	86	0	75	29	17	35	17	1.93
1045010--1045094	35	2.5	33	76	14	82	27	8	10	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1055444--1055492	26	1.9	26	87	4	73	36	4	0	59	1.17
1059294--1059366	29	2.5	29	84	0	83	41	9	19	30	1.83
1063987--1064030	18	2.3	18	85	14	54	47	2	0	50	1.13
1076175--1076218	19	2.3	19	96	0	79	25	27	13	34	1.93
1080155--1080188	10	3.4	10	87	0	50	20	5	0	73	1.04
1090404--1090862	105	4.4	105	90	1	706	32	25	19	22	1.97
1090403--1090862	208	2.2	210	92	1	753	32	25	19	22	1.97
1093481--1093863	37	10.1	37	74	13	260	42	2	6	48	1.43
1093481--1093822	120	3.0	111	76	14	327	43	2	6	47	1.43
1093569--1093660	48	2.0	48	87	8	136	45	2	5	46	1.38

Tables:   1   2   3   4   5   6