genome.fa.s8236.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008236.1 Hibiscus syriacus cultivar Beakdansim tig00110882_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1100419

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 612 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283252--283276	7	3.6	7	100	0	50	72	0	12	16	1.13
291447--291493	24	2.0	24	100	0	94	51	6	4	38	1.47
291675--291790	53	2.1	54	93	4	198	55	10	5	29	1.55
292040--292164	45	2.7	45	82	8	144	49	13	8	28	1.70
292155--292207	2	26.5	2	96	0	97	52	0	0	47	1.00
291773--292177	195	2.1	194	96	1	751	49	12	7	30	1.68
293462--293531	3	23.7	3	94	2	124	64	0	0	35	0.94
295625--295686	3	21.0	3	93	3	108	64	0	0	35	0.94
301026--301050	7	3.6	7	100	0	50	72	0	12	16	1.13
309230--309275	24	1.9	24	100	0	92	50	6	4	39	1.48
309450--309574	52	2.4	53	89	5	184	55	10	4	29	1.54
309832--309961	48	2.7	47	87	4	188	50	13	7	29	1.69
309950--310000	2	25.5	2	100	0	102	50	0	0	49	1.00
309564--309978	202	2.1	202	97	1	780	49	12	7	31	1.68
311254--311326	3	24.7	3	94	2	130	64	0	0	35	0.94
316232--316262	16	1.9	16	93	0	53	41	12	3	41	1.59
316313--316349	18	2.1	18	100	0	74	40	32	10	16	1.83
316331--316572	43	5.6	43	89	1	315	36	25	21	16	1.94
316356--316571	87	2.5	86	90	3	326	36	25	22	16	1.94
320511--320556	18	2.6	18	100	0	92	17	17	43	21	1.88
320512--320578	10	7.0	10	77	13	52	23	17	37	20	1.94
322530--322698	85	2.0	87	84	4	227	37	24	20	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322496--322701	43	4.8	43	82	4	238	36	25	20	17	1.94
325440--325474	7	4.9	7	89	3	52	31	28	25	14	1.95
325442--325488	14	3.4	14	83	16	62	34	27	23	14	1.94
325448--325511	31	2.2	27	83	10	74	32	25	26	15	1.95
326692--326732	14	3.0	14	85	3	57	21	19	41	17	1.90
326814--327062	43	5.8	43	85	1	286	34	24	20	20	1.96
326846--327063	85	2.5	85	89	1	310	35	25	19	19	1.96
326814--327063	128	1.9	129	83	4	317	34	24	20	20	1.96
336739--336797	3	19.7	3	100	0	118	67	0	0	32	0.91
338532--338565	16	2.1	16	89	10	52	11	26	0	61	1.30
338769--338815	25	1.9	24	86	4	67	78	4	14	2	0.99
338772--338813	19	2.3	18	87	4	57	80	2	14	2	0.90
338772--338815	6	7.2	6	82	5	52	79	2	15	2	0.93
347768--348015	130	1.9	130	92	0	415	35	14	13	37	1.85
347782--348046	130	2.0	129	81	4	300	38	12	13	35	1.83
348343--348403	26	2.3	26	82	5	68	45	1	3	49	1.28
348482--348515	16	2.0	18	88	11	54	64	5	2	26	1.30
348638--348680	21	2.0	21	95	0	77	37	0	13	48	1.43
350183--350248	27	2.6	26	81	11	75	25	16	18	39	1.91
352206--352236	2	15.5	2	100	0	62	48	0	0	51	1.00
358515--358555	14	2.9	14	88	0	64	12	12	14	60	1.58
358810--358849	14	2.9	14	85	3	55	2	12	27	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359137--359161	12	2.1	12	100	0	50	24	8	16	52	1.70
365885--365964	31	2.6	30	81	11	92	50	6	8	35	1.59
367576--367723	76	2.0	75	87	4	217	29	2	8	59	1.39
368388--368433	21	2.2	21	92	0	74	19	4	0	76	0.96
368458--368526	16	4.4	17	72	18	60	27	2	0	69	1.02
368479--368537	31	1.9	31	82	6	75	25	3	0	71	1.02
373035--373078	1	44.0	1	81	0	52	9	0	0	90	0.44
373033--373078	9	5.0	9	89	5	74	10	0	0	89	0.50
373030--373078	19	2.5	19	87	12	73	12	0	0	87	0.54
373168--373238	29	2.5	29	90	4	110	43	15	21	19	1.87
375653--375693	21	1.9	22	90	5	66	19	4	0	75	0.98
375728--375764	15	2.4	15	90	4	56	35	2	0	62	1.10
392249--392327	36	2.2	36	93	0	131	29	25	15	30	1.96
397044--397108	30	2.2	30	83	10	80	35	6	15	43	1.72
402175--402352	98	1.8	98	85	4	252	38	17	11	32	1.86
402353--402447	35	2.7	35	83	15	110	41	25	1	32	1.63
402927--403219	148	2.0	148	91	0	478	46	10	6	36	1.65
403355--403429	34	2.2	34	85	4	98	29	1	24	45	1.61
403372--403448	34	2.2	34	90	2	118	31	0	22	46	1.52
405041--405142	30	3.6	29	70	15	88	20	5	16	56	1.60
405390--405466	38	2.0	38	87	0	109	40	12	19	27	1.88
415183--415571	185	2.1	185	92	1	649	43	3	7	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421526--421563	12	3.3	12	92	7	62	7	28	0	63	1.23
422536--422575	21	1.9	21	100	0	80	27	0	15	57	1.38
422585--422686	40	2.5	40	77	10	109	43	0	11	44	1.47
422762--422858	30	3.2	30	85	4	124	39	1	12	47	1.48
423459--423514	20	2.8	20	94	0	94	28	35	16	19	1.93
423500--423647	45	3.3	45	84	5	149	30	20	18	29	1.97
424983--425096	11	10.2	11	75	3	102	41	14	1	42	1.55
425013--425079	9	7.4	9	71	24	52	38	13	1	46	1.52
425022--425136	14	8.5	14	66	28	54	44	13	0	40	1.50
424980--425145	45	3.6	45	92	4	253	43	13	1	41	1.52
425075--425136	16	3.9	15	76	18	54	48	14	0	37	1.44
425386--425435	11	4.1	12	79	18	50	40	12	0	48	1.40
425451--425562	40	3.0	38	76	8	106	50	8	2	39	1.46
425493--425536	22	2.0	22	90	0	70	47	6	4	40	1.50
428787--428849	19	3.4	19	82	10	67	52	7	3	36	1.47
428787--428826	20	2.1	19	90	4	62	52	10	0	37	1.35
428784--428840	16	3.3	15	74	25	51	49	7	1	42	1.40
428786--428849	17	3.6	17	76	23	60	53	7	3	35	1.46
429678--429782	51	2.1	53	83	13	134	51	10	1	36	1.47
429917--429956	20	2.1	19	90	4	62	0	32	7	60	1.25
430204--430274	29	2.4	30	90	2	108	15	32	35	16	1.91
431841--431962	63	1.9	63	98	0	235	27	14	35	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432439--432498	2	30.0	2	93	0	102	48	0	1	50	1.11
432802--432858	28	2.0	28	100	0	114	24	14	14	47	1.80
436304--436362	29	2.0	29	100	0	118	23	13	13	49	1.78
436675--436771	30	3.2	30	82	2	115	36	27	17	18	1.94
436751--436859	31	3.5	31	76	9	114	35	19	17	27	1.94
437647--437677	16	1.9	16	100	0	62	25	25	19	29	1.99
437581--437741	60	2.6	61	80	12	184	24	22	20	32	1.98
439783--439820	19	2.0	20	94	5	69	28	15	28	26	1.96
439788--439946	63	2.5	63	87	2	212	32	19	22	26	1.97
441234--441269	17	2.1	17	100	0	72	13	16	36	33	1.89
441136--441484	118	3.0	120	94	3	604	24	14	24	35	1.94
441500--441560	23	2.7	23	89	0	95	19	26	27	26	1.99
446541--446945	203	2.0	201	98	1	776	25	16	19	38	1.92
451375--451447	29	2.5	30	86	2	103	36	6	31	24	1.82
451525--451709	38	4.9	38	69	9	153	48	5	2	44	1.38
451483--451710	113	2.0	117	94	3	410	46	7	3	42	1.50
451947--451974	2	14.0	2	100	0	56	50	0	0	50	1.00
453818--453881	25	2.6	25	78	14	69	60	0	0	39	0.97
453806--453891	34	2.5	34	92	1	136	58	0	0	41	0.98
453843--453900	2	32.0	2	79	19	56	53	0	0	46	1.00
455611--455652	20	2.0	21	86	9	59	21	7	9	61	1.50
457488--457516	14	2.1	14	100	0	58	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457603--457633	14	2.1	15	94	5	55	67	0	0	32	0.91
457604--457633	15	2.0	15	93	0	51	70	0	0	30	0.88
457480--457716	117	2.0	120	94	5	423	51	10	7	29	1.65
458594--458650	11	5.2	11	82	0	60	56	0	0	43	0.99
462332--462506	87	2.0	87	90	0	278	40	9	10	40	1.71
464253--464287	16	2.1	17	94	5	63	51	2	0	45	1.16
467020--467069	19	2.5	20	87	6	66	48	0	2	50	1.12
467032--467083	20	2.6	20	81	6	52	48	5	1	44	1.38
469117--469194	36	2.1	38	83	9	99	24	5	2	67	1.23
473303--473484	95	1.9	95	89	4	287	33	18	17	30	1.94

Tables:   1   2   3   4   5   6