genome.fa.s8236.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008236.1 Hibiscus syriacus cultivar Beakdansim tig00110882_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1100419

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 612 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610204--610302	42	2.4	42	80	10	121	22	20	33	24	1.97
610636--610757	63	1.9	63	80	3	138	31	36	13	18	1.90
612631--612674	19	2.4	19	85	11	56	75	2	2	20	1.03
612912--613066	20	7.8	20	73	8	118	22	18	19	40	1.92
612932--613047	60	1.9	61	85	5	164	22	17	19	40	1.91
612942--613071	60	2.2	60	83	5	156	23	16	18	41	1.89
612942--613086	20	7.3	19	73	12	87	23	15	19	41	1.90
612995--613086	40	2.3	40	81	5	98	21	16	20	41	1.90
613104--613157	20	2.7	19	75	8	63	24	14	33	27	1.94
614406--614461	26	2.2	25	90	6	94	33	8	17	39	1.81
614413--614465	26	2.0	26	100	0	106	30	11	18	39	1.86
614494--614524	2	15.5	2	100	0	62	51	0	48	0	1.00
614703--614759	3	20.0	3	75	10	57	28	3	1	66	1.18
614704--614767	11	5.5	11	75	14	56	31	3	1	64	1.19
614703--614757	20	2.6	22	80	11	62	27	3	1	67	1.17
618164--618222	30	2.0	30	86	6	84	15	16	10	57	1.64
620303--620354	22	2.5	20	80	17	61	71	11	13	3	1.28
620323--620362	11	3.6	12	87	9	50	67	12	15	5	1.38
621512--621559	14	3.6	14	83	5	55	50	25	0	25	1.50
622100--622215	35	3.3	35	82	8	137	34	16	12	36	1.87
622100--622232	70	1.9	71	81	7	164	33	19	14	33	1.92
622318--622398	35	2.3	35	78	6	92	37	19	12	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622372--622608	103	2.3	104	80	10	274	30	20	11	37	1.88
622570--622676	34	3.1	34	80	1	124	31	19	11	37	1.87
622221--622832	270	2.3	266	82	7	722	32	17	11	38	1.86
622979--623074	28	3.5	29	81	9	121	27	11	15	45	1.80
622998--623086	28	3.3	27	83	9	76	30	7	14	47	1.73
623082--623182	52	2.0	51	90	5	159	32	12	18	35	1.89
623170--623232	30	2.1	30	91	5	101	34	11	14	39	1.81
623186--623342	64	2.4	65	80	5	165	29	12	12	45	1.79
623387--623599	118	1.8	116	80	11	256	32	13	11	43	1.79
624278--624467	39	4.7	38	71	19	116	24	32	18	23	1.97
624293--624732	126	3.4	128	84	8	518	25	29	18	27	1.98
633975--634018	18	2.5	17	81	3	52	45	2	2	50	1.27
635388--635494	3	35.3	3	88	5	162	62	0	2	34	1.10
636812--636881	20	3.5	20	70	18	72	12	22	24	40	1.89
636788--636884	41	2.4	41	100	0	194	14	21	25	38	1.92
636763--636987	103	2.2	103	91	0	360	18	18	24	38	1.93
636896--637011	41	2.8	41	90	0	169	18	19	22	39	1.92
636832--636964	62	2.1	63	81	4	171	18	17	25	38	1.92
637115--637170	6	9.3	6	100	0	112	33	50	16	0	1.45
637655--637769	6	19.5	6	98	0	99	11	5	51	32	1.60
637669--637818	6	25.0	6	94	0	228	18	2	46	33	1.60
637887--638025	41	3.4	41	94	2	235	39	23	17	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637910--638024	21	5.6	21	69	4	99	36	23	17	22	1.95
637931--638003	20	3.6	20	72	3	74	41	21	19	17	1.91
645886--645943	22	2.7	22	80	15	61	43	0	3	53	1.17
646830--646857	3	9.3	3	100	0	56	32	0	0	67	0.91
647185--647217	3	11.0	3	100	0	66	33	0	0	66	0.92
649846--649930	37	2.3	37	86	6	120	42	20	4	32	1.72
656568--656609	21	1.9	23	85	9	61	16	16	14	52	1.75
656568--656624	23	2.7	21	76	12	62	14	21	14	50	1.76
657848--657876	10	2.9	10	100	0	58	72	0	6	20	1.07
661420--661446	10	2.7	10	100	0	54	18	0	0	81	0.69
669264--669309	25	1.9	25	86	8	69	41	4	17	36	1.69
671760--671831	30	2.4	30	90	0	117	30	22	20	26	1.98
671815--671942	31	4.1	30	78	13	116	30	18	21	29	1.97
673214--673257	21	2.1	21	86	0	61	15	27	27	29	1.96
684560--684590	7	4.4	7	100	0	62	25	29	29	16	1.96
684587--684631	5	8.8	5	81	13	56	4	22	53	20	1.63
684580--684624	22	2.0	22	100	0	90	8	22	51	17	1.73
684580--684640	14	4.9	13	70	22	51	9	24	47	18	1.78
684628--684687	10	6.3	9	84	9	75	26	30	30	13	1.94
684634--684688	19	2.8	19	84	13	76	27	30	27	14	1.95
684634--684692	29	2.0	29	90	6	93	30	28	27	13	1.94
691886--691931	5	9.0	5	81	13	58	4	21	54	19	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691879--691930	17	3.2	17	89	10	83	7	23	50	19	1.73
691885--691931	14	3.1	14	90	9	67	4	23	53	19	1.63
691905--691939	14	2.5	14	90	0	52	2	20	51	25	1.61
691936--692004	9	7.3	9	80	8	75	26	28	27	17	1.97
691938--691994	19	3.0	19	92	5	89	26	29	26	17	1.97
691942--692004	19	3.3	19	86	4	83	26	30	25	17	1.97
694540--694573	2	17.0	2	100	0	68	50	0	0	50	1.00
694819--694879	21	2.9	21	95	0	104	31	29	22	16	1.96
699674--699721	22	2.1	23	85	11	64	37	2	2	58	1.22
702661--702777	60	2.0	60	87	0	171	35	15	13	35	1.87
702669--702799	60	2.2	60	76	11	135	35	16	13	35	1.88
706635--706812	97	1.8	97	90	2	286	41	14	6	38	1.70
708544--708590	19	2.5	19	92	0	85	23	31	23	21	1.98
715945--716023	34	2.3	36	91	6	128	20	31	25	22	1.98
716140--716181	21	2.0	21	95	0	75	23	21	28	26	1.99
734398--734437	21	1.9	21	89	0	62	10	25	40	25	1.86
738288--738327	21	1.9	21	85	10	55	35	10	2	52	1.48
740633--740725	20	5.0	19	75	19	90	19	35	29	16	1.93
740661--740739	34	2.3	35	95	2	142	20	35	25	18	1.95
740684--740739	15	3.5	15	72	25	51	19	35	25	19	1.95
742493--742562	35	2.0	35	100	0	140	34	8	17	40	1.80
754845--754930	35	2.5	35	84	0	100	40	20	1	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
754899--754939	21	2.0	20	90	9	66	46	12	0	41	1.41
755062--755095	16	2.0	18	88	11	54	26	2	5	64	1.30
761092--761118	13	2.1	13	100	0	54	44	0	7	48	1.31
774850--774875	11	2.4	11	100	0	52	34	15	7	42	1.75
778623--778672	23	2.2	23	96	0	91	28	6	26	40	1.79
781793--781858	27	2.4	27	84	0	87	25	22	30	21	1.99
783775--783826	23	2.3	23	100	0	104	26	3	26	42	1.73
785866--785909	23	2.0	23	90	4	72	34	0	27	38	1.57
787349--787396	2	24.0	2	100	0	96	50	0	0	50	1.00
787604--787697	30	3.1	30	80	3	91	37	13	20	28	1.91
789072--789105	2	17.0	2	100	0	68	50	0	0	50	1.00
789235--789273	14	2.9	14	80	3	53	64	0	0	35	0.94
789229--789274	20	2.4	18	83	16	58	63	0	0	36	0.95
792431--792630	100	2.0	98	87	9	289	36	9	5	50	1.56
800045--800074	10	3.0	10	95	0	51	43	0	50	6	1.28
811083--811112	2	15.0	2	100	0	60	50	0	0	50	1.00
812920--813127	41	4.9	42	78	11	235	21	19	24	34	1.96
812945--813017	20	3.6	20	75	3	83	10	21	27	39	1.87
812924--813029	20	5.2	21	68	7	67	17	19	26	35	1.95
813057--813130	21	3.6	21	74	3	87	21	14	27	36	1.93
813233--813262	6	5.2	6	96	4	53	30	53	16	0	1.44
813739--813774	6	6.0	6	100	0	72	0	16	50	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
813871--813993	41	3.0	42	84	7	137	39	22	19	18	1.93
813934--813997	21	3.1	21	75	4	76	37	26	18	17	1.93
818659--818775	39	3.0	39	77	7	112	32	20	25	21	1.97
832716--832749	2	17.0	2	93	0	59	47	0	2	50	1.16
833971--834044	32	2.3	32	85	0	94	32	9	24	33	1.87
834596--834715	43	2.8	43	88	0	177	30	30	17	20	1.96
834596--834749	43	3.6	43	84	0	164	30	30	16	22	1.96
834597--834761	86	1.9	86	80	2	188	32	28	16	22	1.96
834971--835073	43	2.4	43	85	4	145	31	33	13	22	1.93
834639--835343	332	2.1	334	84	3	916	32	24	18	25	1.97

Tables:   1   2   3   4   5   6