genome.fa.s8258.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008258.1 Hibiscus syriacus cultivar Beakdansim tig00110911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1617810

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 931 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613108--613399	43	6.8	43	86	1	390	30	21	19	28	1.98
613086--613435	130	2.8	128	83	6	399	30	22	19	28	1.98
613366--613435	36	1.9	36	91	0	113	27	27	18	27	1.98
615220--615255	18	2.0	18	89	10	56	72	0	2	25	0.98
616081--616130	23	2.2	23	82	7	57	2	24	0	74	0.93
616689--616732	3	15.0	3	90	4	72	70	0	0	29	0.88
616930--617047	42	2.7	45	79	11	136	23	17	33	25	1.97
625272--625334	30	2.1	30	82	5	74	33	4	22	39	1.75
631196--631222	3	9.0	3	100	0	54	66	0	0	33	0.92
632594--632643	25	2.0	25	84	7	66	56	2	0	42	1.11
633696--633752	16	3.6	16	100	0	114	43	7	0	49	1.29
637673--637785	56	2.0	55	86	6	156	30	7	21	40	1.81
637996--638042	16	2.9	16	78	6	51	23	2	14	59	1.46
638258--638410	66	2.3	66	86	4	213	43	5	1	50	1.33
638361--638413	27	1.9	28	92	3	90	37	3	0	58	1.16
638359--638418	27	2.2	27	85	5	86	40	3	0	56	1.16
638522--638567	22	2.1	22	84	8	58	50	0	0	50	1.00
639198--639547	176	2.0	176	84	7	462	38	13	17	30	1.89
639550--639581	2	16.0	2	100	0	64	50	0	0	50	1.00
640041--640102	27	2.3	27	94	0	106	38	20	6	33	1.79
646940--646979	20	1.9	22	85	10	57	50	0	0	50	1.00
647200--647259	20	3.3	20	65	29	53	23	11	23	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647706--647738	2	16.5	2	100	0	66	48	0	0	51	1.00
648849--648909	33	1.9	31	83	9	79	22	14	16	45	1.84
648858--648969	33	3.4	33	77	1	116	26	11	16	45	1.81
648981--649050	36	1.9	36	82	0	86	27	12	12	47	1.78
680257--680292	17	2.1	17	89	0	54	58	2	25	13	1.49
682304--682353	22	2.3	22	96	0	91	50	24	10	16	1.75
683653--684091	134	3.3	134	86	1	574	29	15	22	33	1.94
684398--684646	8	31.4	8	97	1	448	14	0	35	50	1.43
688162--688204	20	2.1	21	87	8	63	18	13	0	67	1.23
688161--688210	20	2.5	20	75	15	59	18	18	0	64	1.30
691485--691534	24	2.1	24	85	7	66	26	2	12	60	1.43
692009--692042	17	2.1	16	88	5	50	14	8	0	76	1.01
692374--693029	8	82.0	8	86	0	639	0	11	49	39	1.40
692374--693029	12	54.7	12	89	0	639	0	11	49	39	1.40
692374--693029	20	32.8	20	88	0	639	0	11	49	39	1.40
696808--696850	21	2.0	21	86	8	61	44	2	13	39	1.57
708219--708304	11	7.8	11	74	7	59	16	11	17	54	1.70
708207--708276	22	3.2	21	74	8	59	15	11	20	52	1.73
708207--708304	33	3.0	33	76	7	92	16	11	17	55	1.69
711470--711516	19	2.5	19	100	0	94	27	17	25	29	1.97
713919--713988	30	2.4	29	79	9	81	37	18	5	38	1.75
723711--723814	37	2.8	37	81	4	113	40	14	14	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724540--724595	22	2.6	23	78	18	66	25	3	0	71	1.02
728037--728072	8	4.6	8	89	6	56	13	16	13	55	1.69
728037--728072	15	2.3	16	90	4	56	13	16	13	55	1.69
729239--729302	24	2.9	22	77	11	76	75	9	14	1	1.12
729917--729993	22	3.5	22	98	0	145	36	25	12	24	1.92
730803--732705	106	18.0	106	90	2	2846	33	24	17	23	1.96
733436--733540	37	2.8	37	86	0	147	40	15	15	29	1.88
734096--734203	22	4.9	23	70	21	79	27	6	0	64	1.24
734223--734252	12	2.6	11	94	5	51	23	6	6	63	1.43
734629--734695	2	33.5	2	100	0	134	49	0	0	50	1.00
734828--734878	25	2.2	23	82	10	59	17	3	0	78	0.90
737111--737165	12	4.0	13	74	25	51	45	0	0	54	0.99
737124--737162	6	6.8	6	82	11	55	48	0	0	51	1.00
737106--737164	28	2.1	28	81	6	66	45	0	0	54	0.99
737124--737162	11	3.4	12	86	10	55	48	0	0	51	1.00
737124--737162	17	2.3	17	86	8	53	48	0	0	51	1.00
738627--738686	31	1.9	31	86	6	86	60	3	11	25	1.47
741100--741154	20	2.8	20	88	0	83	9	18	25	47	1.78
741103--741164	20	3.1	20	85	0	79	9	19	25	45	1.81
748456--748563	56	1.9	57	84	5	148	39	12	11	36	1.79
749067--749154	20	4.3	20	83	1	104	45	25	10	19	1.81
749121--749212	19	4.7	19	84	8	105	34	23	10	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749103--749213	39	2.8	40	81	8	129	37	23	11	27	1.89
749103--749212	20	5.6	20	84	5	118	37	23	11	27	1.90
749199--749249	18	2.8	18	96	0	93	25	17	17	39	1.92
750159--750212	24	2.2	24	90	0	81	20	18	18	42	1.89
752435--752470	18	2.0	18	100	0	72	55	22	5	16	1.62
752704--752799	34	2.8	34	88	0	147	33	21	20	23	1.97
754875--755037	20	8.2	20	87	0	229	49	22	17	11	1.77
755592--755629	20	1.9	20	94	0	67	15	10	23	50	1.75
755660--755704	20	2.2	20	84	0	54	42	15	15	26	1.87
755713--755761	20	2.5	20	86	6	64	12	16	24	46	1.81
756022--756056	6	5.8	6	86	0	52	20	2	17	60	1.49
759297--759343	20	2.3	21	85	3	60	31	12	23	31	1.92
759313--759400	20	4.3	20	89	4	115	20	12	25	42	1.87
759313--759400	40	2.2	41	89	2	133	20	12	25	42	1.87
759394--759436	20	2.2	20	86	0	59	23	20	18	37	1.94
759438--759482	21	2.1	21	95	0	81	37	17	24	20	1.93
760604--760722	3	39.7	3	73	6	71	33	5	3	57	1.40
760608--760651	16	2.9	14	86	10	52	34	6	2	56	1.38
760605--760655	19	2.7	18	85	8	66	33	7	1	56	1.39
763575--763635	16	3.8	16	86	0	95	59	21	11	8	1.58
767733--767787	24	2.3	24	90	0	83	54	20	10	14	1.69
767805--767905	40	2.4	40	80	11	114	38	16	11	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768895--768937	21	2.0	20	86	8	59	44	6	4	44	1.52
774470--774494	10	2.5	10	100	0	50	72	20	8	0	1.10
780008--780089	21	3.6	23	74	15	71	29	21	21	26	1.99
780008--780094	23	3.8	23	75	14	81	28	22	22	25	1.99
780269--780306	19	2.0	20	84	5	51	42	23	7	26	1.81
782829--782988	65	2.5	65	83	5	200	32	21	15	31	1.94
783206--783230	10	2.5	10	100	0	50	72	20	8	0	1.10
785371--785417	2	24.0	2	91	4	78	48	0	0	51	1.00
786752--786796	15	3.0	15	81	12	65	11	0	6	82	0.84
797318--797357	17	2.4	17	88	12	57	77	5	17	0	0.94
798254--798855	124	4.8	124	91	1	936	33	24	16	25	1.96
799464--799504	2	21.0	2	90	5	66	48	0	0	51	1.00
799504--799534	2	15.5	2	100	0	62	0	0	48	51	1.00
800685--800724	21	2.0	20	90	5	62	30	2	0	67	1.04
800666--800750	23	3.5	24	74	18	70	25	3	1	69	1.12
800896--800970	11	6.7	11	76	8	53	12	4	8	76	1.15
800897--800933	12	3.2	12	88	3	58	10	0	8	81	0.89
800920--801003	44	1.9	43	83	7	107	14	5	7	72	1.25
802006--802040	17	2.1	17	88	0	52	54	0	2	42	1.15
802227--802301	14	5.4	14	77	12	75	66	1	0	32	1.00
802500--802551	21	2.5	21	96	0	95	50	3	17	28	1.64
803948--804013	3	22.3	3	90	3	107	66	3	0	30	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
806531--806562	17	1.9	16	93	6	55	78	6	15	0	0.95
807470--808141	124	5.5	124	88	3	938	32	24	16	25	1.96
808713--808795	2	42.0	2	95	2	150	49	0	0	50	1.00
808795--808823	2	14.5	2	100	0	58	0	0	48	51	1.00
810111--810150	20	2.0	21	85	5	55	22	7	2	67	1.28
810179--810251	12	5.7	12	78	18	67	12	2	9	75	1.15
810200--810238	14	2.8	14	81	14	53	7	0	10	82	0.86
810179--810251	25	2.8	25	80	12	85	12	2	9	75	1.15
811324--811358	17	2.1	17	88	0	52	54	0	2	42	1.15
811568--811639	15	5.0	14	76	17	67	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8