genome.fa.s8258.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008258.1 Hibiscus syriacus cultivar Beakdansim tig00110911_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1617810

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 931 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414246--1414304	12	4.9	12	87	0	73	32	0	1	66	1.02
1415311--1415349	16	2.4	16	95	0	69	25	51	5	17	1.66
1415612--1415666	18	3.0	18	80	17	60	49	0	1	49	1.11
1415588--1415682	31	3.1	31	82	8	113	46	3	5	45	1.41
1418060--1418089	14	2.1	14	100	0	60	33	6	13	46	1.69
1419589--1419656	26	2.5	25	80	17	66	20	4	10	64	1.41
1421697--1421776	23	3.7	22	68	14	58	28	12	3	55	1.54
1427074--1427228	67	2.3	66	85	3	195	30	15	12	41	1.84
1427083--1427243	66	2.4	66	84	4	200	32	14	11	42	1.81
1427253--1427338	37	2.3	37	83	4	100	32	18	10	38	1.85
1427170--1427356	99	1.9	99	85	2	259	33	16	9	40	1.81
1427355--1427427	32	2.3	32	97	0	137	43	17	12	26	1.84
1428064--1428103	14	2.9	14	92	0	62	70	0	27	2	1.01
1428108--1428160	6	7.9	7	85	14	60	86	0	3	9	0.68
1429811--1430206	138	2.8	139	86	3	512	28	13	15	41	1.86
1432089--1432273	60	3.1	58	81	8	203	35	17	4	42	1.70
1432381--1432539	58	2.7	60	83	3	187	39	4	21	34	1.73
1435210--1435572	198	1.8	198	89	0	564	36	19	12	31	1.89
1436408--1436448	20	1.9	22	85	14	59	51	2	7	39	1.43
1436375--1436500	63	2.0	63	90	3	200	50	3	14	32	1.59
1437572--1437611	18	2.2	18	95	0	71	35	0	37	27	1.57
1440069--1440118	23	2.2	23	85	0	64	40	8	18	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1440032--1440193	87	1.9	87	92	0	270	40	12	14	32	1.83
1440222--1440711	198	2.5	197	82	6	580	31	16	14	38	1.89
1443876--1444986	196	5.6	198	86	5	1407	30	13	16	39	1.86
1443855--1444986	197	5.7	198	86	4	1436	31	13	16	39	1.86
1448062--1449210	198	5.9	198	91	3	1911	31	15	15	36	1.90
1449540--1449589	19	2.6	19	93	0	82	58	10	2	30	1.42
1453576--1454113	177	3.1	173	84	8	687	26	17	13	42	1.87
1454100--1454154	20	2.8	20	100	0	110	32	16	14	36	1.89
1461222--1461276	24	2.4	24	77	17	64	50	9	0	40	1.34
1463132--1463746	182	3.4	181	86	2	822	26	16	13	43	1.85
1467241--1467555	43	7.3	41	71	14	181	25	14	8	51	1.71
1467370--1467431	21	3.0	21	68	13	56	29	12	11	46	1.77
1467241--1467533	87	3.4	85	76	10	258	25	15	7	51	1.69
1467233--1467466	129	1.8	128	79	9	269	26	14	6	52	1.67
1471448--1471536	20	4.4	20	95	0	160	37	13	23	25	1.92
1471620--1471699	34	2.4	34	97	0	151	37	15	21	26	1.92
1472081--1472636	56	9.9	56	87	1	760	36	18	20	24	1.95
1476100--1476273	94	1.9	94	87	2	260	35	12	23	28	1.92
1476099--1476307	94	2.2	94	80	3	215	34	13	22	28	1.92
1476629--1477125	56	8.9	56	90	1	786	35	18	21	24	1.96
1480778--1480872	49	1.9	49	100	0	190	40	14	12	32	1.84
1493175--1493288	59	1.9	59	85	3	158	39	3	26	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1503233--1503271	20	2.0	20	85	10	53	61	5	2	30	1.31
1503365--1503466	43	2.4	43	86	0	150	52	25	5	15	1.65
1507883--1507928	18	2.7	17	90	6	67	34	6	30	28	1.82
1508462--1508544	38	2.2	38	89	8	134	37	36	10	15	1.83
1508710--1508776	28	2.4	28	95	2	118	43	34	8	13	1.75
1508949--1509023	37	2.0	38	92	2	125	41	37	9	12	1.74
1508949--1509036	35	2.4	37	86	5	126	37	40	10	11	1.75
1508413--1509256	257	3.4	252	86	7	1199	36	27	11	24	1.91
1509270--1509332	26	2.4	26	100	0	126	36	28	19	15	1.92
1511711--1511763	25	2.2	23	87	12	72	37	3	0	58	1.16
1513368--1513435	22	3.0	22	78	4	64	47	20	11	20	1.81
1513400--1513494	50	1.9	50	89	2	147	51	17	10	20	1.74
1518605--1518697	21	4.4	20	90	5	132	39	19	23	17	1.92
1518605--1518701	42	2.3	42	89	7	160	40	20	22	16	1.91
1521317--1521382	12	5.1	13	79	20	52	75	0	18	6	1.00
1521315--1521354	17	2.4	17	91	8	64	77	0	22	0	0.77
1521301--1521352	12	4.2	12	76	16	52	71	0	25	3	1.03
1521329--1521377	12	3.8	13	84	10	57	75	0	16	8	1.03
1522627--1523035	128	3.2	127	87	3	556	35	15	26	22	1.94
1522627--1523097	128	3.7	126	80	8	382	35	15	26	22	1.93
1523804--1524005	55	3.7	55	87	2	282	30	13	27	28	1.94
1535612--1535637	12	2.2	12	100	0	52	34	0	42	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1536573--1536625	22	2.5	22	76	14	65	43	7	3	45	1.50
1537177--1537229	22	2.5	22	76	14	65	43	7	3	45	1.50
1538560--1538676	31	3.7	31	78	8	121	51	11	0	36	1.39
1548728--1548786	29	2.0	30	86	3	84	28	8	27	35	1.86
1548799--1548857	25	2.3	26	85	5	77	44	1	5	49	1.34
1548835--1548882	17	2.7	18	74	9	53	41	2	4	52	1.32
1558525--1558611	46	1.9	44	83	4	111	16	22	21	39	1.92
1558520--1558616	23	4.3	22	84	5	97	15	22	23	38	1.92
1561776--1561810	17	2.1	16	89	5	52	22	0	0	77	0.78
1561865--1561898	17	2.0	17	88	0	50	35	0	5	58	1.22
1562956--1562994	21	1.9	19	90	10	60	30	0	5	64	1.15
1569010--1569062	22	2.4	22	96	0	97	37	13	20	28	1.90
1576106--1576131	2	13.0	2	100	0	52	50	0	0	50	1.00
1579851--1579902	23	2.3	23	96	0	95	26	25	26	21	1.99
1581462--1581503	22	1.9	23	85	9	61	42	4	11	40	1.63
1583669--1583716	8	5.6	8	79	13	51	81	14	4	0	0.84
1584656--1584708	22	2.4	22	96	0	97	37	13	20	28	1.90
1595494--1595545	23	2.3	23	96	0	95	26	25	26	21	1.99
1599295--1599337	21	2.2	20	87	8	61	83	11	4	0	0.78
1601792--1601833	22	1.9	23	85	9	61	42	4	11	40	1.63
1603789--1603826	20	1.9	20	88	0	58	23	18	31	26	1.97
1604629--1604739	31	3.6	31	88	1	161	18	17	21	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1604629--1604752	61	2.0	62	89	4	189	20	16	21	41	1.90
1607831--1607898	23	3.0	23	82	8	93	17	25	26	30	1.97
1614496--1614533	20	1.9	20	88	0	58	26	36	26	10	1.89

Tables:   1   2   3   4   5   6   7   8

The End!