genome.fa.s8270.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008270.1 Hibiscus syriacus cultivar Beakdansim tig00110927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  726180

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191365--191413	2	24.5	2	100	0	98	48	0	0	51	1.00
195598--195631	15	2.2	16	89	5	52	38	2	0	58	1.13
197012--197069	3	19.3	3	92	0	89	60	0	3	36	1.14
197389--198392	114	8.8	114	91	4	1516	28	19	13	38	1.90
199131--199514	160	2.4	164	93	3	652	37	22	13	26	1.91
199131--199514	83	4.7	83	88	7	606	37	22	13	26	1.91
200278--200320	16	2.5	16	85	11	50	55	4	4	34	1.41
200296--200332	16	2.3	16	90	0	56	54	5	8	32	1.53
200648--200719	14	4.9	14	80	11	74	1	16	0	81	0.75
200649--200719	33	2.2	32	85	7	90	1	15	0	83	0.73
212061--212089	14	2.0	15	93	6	51	41	3	0	55	1.17
212054--212098	18	2.5	18	82	7	56	46	2	0	51	1.13
213467--213536	3	23.3	3	91	0	113	61	0	1	37	1.05
213458--213536	18	4.4	18	90	3	124	59	0	1	39	1.06
214500--214537	18	2.1	18	100	0	76	34	10	0	55	1.34
218347--218401	14	4.2	14	77	17	73	7	10	27	54	1.61
218345--218408	24	2.7	24	92	0	110	9	10	25	54	1.65
219458--219508	16	3.3	16	78	5	61	11	7	15	64	1.48
220114--220141	14	2.0	14	100	0	56	57	7	21	14	1.61
220753--220790	12	3.2	12	86	13	53	28	7	0	63	1.23
224284--224319	18	2.0	18	100	0	72	33	11	27	27	1.91
226346--226381	12	3.0	12	87	0	54	30	8	25	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234505--234574	31	2.3	31	82	5	79	20	30	27	22	1.98
237598--237661	23	2.8	23	100	0	128	60	9	6	23	1.50
243070--243149	40	2.0	40	95	0	142	47	7	13	31	1.71
254727--254893	15	11.3	14	72	19	72	77	4	5	12	1.08
254751--254877	9	13.9	9	70	19	50	81	3	4	11	0.96
254760--254878	19	6.5	17	73	13	71	81	3	4	10	0.95
254751--254881	10	12.7	10	74	17	83	80	3	4	11	0.96
254713--254868	76	2.1	74	82	12	187	78	4	6	10	1.08
254749--254881	5	25.8	5	72	15	67	80	3	4	12	0.97
254959--255065	6	18.3	6	70	12	62	77	1	4	15	1.02
254959--255065	5	19.6	5	75	18	56	77	1	4	15	1.02
254984--255065	7	11.0	7	73	19	53	79	2	4	13	1.00
254997--255065	21	3.2	20	78	13	68	81	1	5	11	0.93
255813--255860	18	2.5	20	76	13	55	39	6	0	54	1.26
255823--255869	18	2.6	18	86	3	67	46	6	0	46	1.28
255879--255952	29	2.5	29	77	2	85	39	10	0	50	1.38
255985--256337	30	12.1	30	72	11	155	52	0	6	40	1.32
255983--256058	28	2.6	30	81	6	84	53	0	2	43	1.14
256023--256111	23	3.6	23	75	21	90	56	0	5	38	1.23
256023--256111	24	3.6	22	72	21	70	56	0	5	38	1.23
255984--256106	52	2.3	53	83	8	151	52	0	4	43	1.23
256558--256592	16	2.2	16	89	0	52	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257615--257699	28	3.0	28	96	3	152	38	3	7	50	1.47
257620--257668	16	3.3	16	67	21	52	36	4	6	53	1.45
258199--258263	34	1.9	34	96	0	121	44	3	3	49	1.33
258412--258477	33	2.0	32	97	2	123	46	1	3	48	1.26
260834--260915	23	3.2	27	85	8	102	39	6	12	42	1.67
263106--263154	23	2.1	23	85	7	64	57	14	2	26	1.48
266989--267013	11	2.3	11	100	0	50	68	8	8	16	1.38
267505--267553	23	2.1	23	85	7	64	57	14	2	26	1.48
270495--270592	29	3.3	29	85	7	119	44	6	0	48	1.27
270548--270624	28	2.8	27	79	14	70	51	3	2	41	1.34
270589--270662	30	2.4	32	84	8	91	55	1	5	37	1.31
270658--270722	30	2.2	30	83	5	78	44	1	10	43	1.48
270728--270835	31	3.7	30	80	6	123	57	1	8	32	1.39
270754--270910	57	2.7	57	77	10	165	56	1	7	33	1.39
275877--275943	31	2.2	31	91	0	107	20	11	11	55	1.68
276683--276747	31	2.1	31	94	0	112	52	13	12	21	1.73
276910--276968	31	1.9	31	82	0	73	50	13	13	22	1.76
287493--287586	38	2.5	38	81	6	109	22	19	30	27	1.98
287490--287586	18	5.1	20	79	13	96	22	19	29	27	1.98
287845--287873	14	2.0	15	93	6	51	24	6	20	48	1.74
287960--288065	4	27.0	4	94	3	189	26	0	23	50	1.50
296708--296811	19	5.2	19	85	11	95	22	29	28	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299521--299573	20	2.7	20	96	0	97	22	26	30	20	1.98
300846--300883	20	1.9	20	100	0	76	21	26	31	21	1.98
300856--300918	31	2.0	31	90	0	99	26	22	28	22	1.99
307163--307803	321	2.0	321	100	0	1282	28	14	17	39	1.88
308733--308775	21	2.0	21	90	0	68	53	23	13	9	1.69
310205--310666	112	4.1	112	93	0	764	45	12	15	26	1.82
310537--310991	181	2.5	181	89	2	698	43	12	15	27	1.83
311631--311678	23	2.1	23	88	0	69	37	16	8	37	1.79
312140--312177	20	1.9	20	94	0	67	55	0	0	44	0.99
313077--313106	2	15.5	2	93	6	53	50	0	0	50	1.00
314043--314112	31	2.3	30	90	4	113	37	14	24	24	1.92
315047--315110	31	2.1	31	96	0	119	40	12	25	21	1.88
315213--315275	12	5.1	12	71	25	51	49	1	0	49	1.10
315193--315356	28	6.1	27	68	20	94	49	3	1	45	1.28
315213--315275	16	3.8	16	76	17	65	49	1	0	49	1.10
315295--315357	31	2.0	31	90	6	101	53	3	3	39	1.33
315302--315348	24	1.9	25	82	4	60	55	4	2	38	1.31
315211--315366	78	1.9	77	81	10	179	48	2	2	46	1.29
315414--315471	15	3.8	15	73	13	55	50	3	3	43	1.36
315453--315494	22	2.0	21	90	9	68	52	7	4	35	1.50
315609--315697	20	4.4	21	75	15	71	42	7	6	42	1.60
315618--315660	16	2.6	15	85	14	50	44	2	6	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315577--315699	59	2.0	61	84	6	162	43	6	8	42	1.60
315662--315732	37	2.0	36	83	5	90	39	11	9	39	1.74
315756--315823	14	4.9	14	74	1	57	23	1	25	50	1.58
315764--315802	21	1.9	20	89	5	60	23	2	23	51	1.61
315758--315809	21	2.5	19	76	14	50	23	1	25	50	1.60
315756--315825	28	2.6	27	88	4	104	24	1	25	48	1.59
315944--316024	20	3.9	20	71	13	65	38	9	8	43	1.69
316059--316116	21	2.8	21	81	2	55	20	1	27	50	1.58
316065--316116	21	2.5	21	84	3	61	21	1	26	50	1.59
316412--316464	22	2.6	21	85	8	74	41	9	0	49	1.35
316439--316562	49	2.5	48	84	5	158	45	5	4	45	1.46
316556--316614	21	2.8	22	77	12	61	47	3	3	45	1.36
316535--316718	11	17.8	10	64	25	57	46	3	2	46	1.35
316536--316718	20	8.8	22	71	15	97	46	3	2	46	1.35
316599--316718	20	5.8	20	84	9	127	45	4	2	47	1.35
316599--316697	42	2.4	42	93	3	164	44	5	3	47	1.40
316497--316715	42	5.3	41	72	18	159	46	4	3	46	1.39
319446--319511	31	2.1	31	91	0	105	33	12	30	24	1.91
320302--320368	31	2.2	31	86	5	100	22	28	13	35	1.92
321765--322290	263	2.0	263	97	0	989	26	16	20	35	1.94
323393--323430	13	2.8	13	82	17	51	60	0	2	36	1.11
323410--323493	19	4.5	19	73	14	59	58	2	3	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323650--323684	16	2.2	16	89	0	52	37	17	20	25	1.94
324382--324912	59	9.0	59	91	1	794	31	20	15	33	1.93
325204--325256	22	2.5	22	87	6	74	32	26	13	28	1.93
331394--331751	59	6.1	59	89	0	518	33	20	12	34	1.90
332072--332109	20	1.9	20	88	0	58	39	23	7	28	1.83
332167--332238	22	3.5	22	81	9	82	29	25	15	30	1.96
332093--332295	95	2.2	93	87	6	293	30	25	14	30	1.95
339093--339126	16	2.1	16	88	0	50	50	0	2	47	1.16
339168--339204	15	2.4	16	86	13	51	32	2	5	59	1.34
339693--339739	23	2.1	23	84	7	62	34	14	14	36	1.88

Tables:   1   2   3   4   5