genome.fa.s8270.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008270.1 Hibiscus syriacus cultivar Beakdansim tig00110927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  726180

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339666--339913	130	1.9	130	91	0	406	35	12	15	36	1.86
340310--340385	35	2.2	35	90	0	116	35	1	25	38	1.64
342819--342892	21	3.5	21	67	26	66	29	29	10	29	1.91
342776--342890	42	2.7	42	91	2	178	32	29	13	24	1.94
346136--346161	2	13.0	2	100	0	52	50	0	0	50	1.00
347787--347849	12	5.8	10	72	17	54	14	4	1	79	0.97
347787--347829	16	2.6	17	77	7	52	13	2	2	81	0.89
347788--347849	29	2.2	28	83	11	81	12	4	1	80	0.94
348509--348576	27	2.4	28	73	9	68	77	7	0	14	0.96
349552--349588	19	1.9	19	88	0	56	32	27	16	24	1.96
349614--349706	20	4.6	20	81	10	82	29	20	20	30	1.98
349614--349686	21	3.5	21	83	9	78	26	21	20	31	1.98
349674--349726	20	2.7	20	96	0	97	41	16	18	22	1.90
349723--349784	20	3.0	21	70	13	65	32	27	20	19	1.97
349778--349842	18	3.4	18	70	12	58	30	21	15	32	1.94
350624--350677	24	2.2	24	93	0	90	20	18	20	40	1.91
352926--352960	18	1.9	18	94	0	61	57	22	2	17	1.53
353138--353418	20	14.7	20	76	10	248	36	21	20	22	1.95
353163--353319	54	2.9	54	88	3	201	38	21	20	19	1.94
353143--353418	74	3.7	74	74	10	247	36	21	20	21	1.95
353138--353423	54	5.0	59	80	8	191	37	20	20	21	1.95
353553--353632	30	2.4	34	78	20	105	56	13	3	26	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353568--353633	30	2.2	30	97	0	123	56	12	3	28	1.51
355013--355119	21	5.1	21	73	4	90	25	18	36	19	1.95
355011--355119	42	2.6	42	79	2	121	24	18	37	19	1.94
355597--355636	20	2.0	20	100	0	80	50	25	10	15	1.74
355627--355712	20	4.3	20	83	1	66	37	25	16	20	1.93
355745--355845	20	5.3	20	74	13	106	19	21	21	36	1.95
355743--355887	74	2.0	74	94	0	254	20	20	21	37	1.95
355743--355864	34	3.4	34	82	12	172	19	22	22	35	1.96
356017--356078	31	2.0	31	87	9	90	51	17	8	22	1.71
356267--356306	21	1.9	21	84	0	53	30	32	17	20	1.95
357926--358000	22	3.4	21	87	5	105	20	16	44	20	1.87
358165--358205	20	2.0	20	95	0	73	24	19	29	26	1.98
358337--358373	19	1.9	19	88	0	56	24	16	27	32	1.96
360437--360529	21	4.5	21	78	4	100	39	18	24	17	1.91
360437--360529	41	2.3	41	100	0	186	39	18	24	17	1.91
360456--360590	41	3.3	41	82	6	132	37	21	21	19	1.94
360518--360612	20	4.7	20	78	7	84	32	25	17	24	1.97
361097--361155	20	3.0	20	84	0	64	18	18	20	42	1.90
362475--362519	18	2.5	18	88	0	72	26	44	15	13	1.83
363001--363056	20	2.8	20	83	2	69	37	23	23	16	1.93
363040--363132	32	2.8	33	91	3	161	46	20	19	13	1.84
363056--363113	14	3.9	14	77	16	62	48	22	17	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363147--363204	14	3.9	14	75	16	62	8	15	25	50	1.73
363142--363220	32	2.4	33	91	2	133	10	17	24	48	1.78
363205--363260	20	2.8	20	86	7	78	17	25	23	33	1.96
365068--365103	14	2.6	14	90	0	54	30	0	22	47	1.52
365221--365288	19	3.8	19	81	14	92	48	17	20	13	1.80
365307--365364	20	2.9	20	97	0	107	15	22	24	37	1.93
366413--366466	24	2.2	24	90	0	81	24	16	20	38	1.92
366641--366665	12	2.1	12	100	0	50	72	0	28	0	0.86
368956--369086	19	7.7	19	63	23	76	42	19	22	16	1.89
368956--369082	33	3.8	33	84	4	184	42	18	22	16	1.89
368957--369089	66	2.0	66	94	0	230	41	18	21	18	1.90
369097--369153	14	3.7	14	75	20	60	8	24	22	43	1.81
369082--369171	33	2.7	33	92	0	144	13	21	21	44	1.85
369111--369171	19	3.5	19	70	21	60	11	21	21	45	1.82
369278--369314	14	2.6	14	91	0	65	45	24	0	29	1.53
370670--370739	21	3.3	21	70	4	61	20	20	35	24	1.96
370670--370792	42	2.9	41	80	7	122	22	17	36	22	1.95
372815--372913	33	3.0	33	92	1	162	39	23	26	11	1.88
372790--372935	19	8.1	19	72	17	114	42	20	24	12	1.86
372931--372997	19	3.5	19	83	2	89	8	16	23	50	1.73
373515--373567	20	2.7	20	93	0	88	26	20	28	24	1.99
373576--373629	20	2.7	20	91	0	90	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373511--373650	61	2.3	61	79	6	151	23	17	24	34	1.96
374368--374411	18	2.5	18	77	3	54	38	4	15	40	1.68
374890--374951	25	2.3	28	81	15	78	58	1	3	37	1.24
375164--375246	18	4.8	18	70	16	59	21	3	2	72	1.12
377919--377957	16	2.4	17	82	8	53	58	5	0	35	1.20
380422--380464	18	2.4	18	85	11	61	25	4	9	60	1.47
384798--384894	42	2.3	42	80	7	115	32	10	24	31	1.89
385749--385790	21	2.0	21	90	0	66	21	14	28	35	1.92
385762--385829	21	3.1	21	81	12	59	26	17	26	29	1.98
385792--385879	23	3.9	23	78	11	92	27	20	23	28	1.99
387910--388100	36	5.7	36	66	22	112	24	21	14	38	1.91
387903--388165	66	4.0	66	89	4	347	23	23	14	38	1.92
388580--388626	3	15.7	3	100	0	94	34	0	0	65	0.93
389294--389333	21	1.9	21	89	0	62	77	7	15	0	0.98
389928--389966	16	2.4	16	100	0	78	17	12	15	53	1.72
403476--403552	29	2.6	28	78	15	86	22	10	10	57	1.62
403511--403656	43	3.4	43	77	8	111	26	8	7	57	1.56
403638--403804	44	3.9	42	79	10	130	28	15	5	49	1.68
403638--403696	21	2.9	20	67	20	50	28	13	3	54	1.55
405000--405109	58	1.9	58	96	0	202	37	13	14	34	1.86
405000--405171	58	2.9	57	84	7	188	39	12	15	33	1.84
413046--413163	20	5.8	20	82	2	137	39	16	19	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413046--413161	41	2.9	40	84	2	160	39	16	19	24	1.91
413047--413163	61	1.9	61	89	0	180	40	16	19	23	1.91
413714--413792	20	3.9	21	86	5	94	51	17	18	11	1.75
413842--413905	20	3.1	21	78	17	80	10	23	17	48	1.78
415598--415971	94	4.1	93	92	2	578	22	12	18	47	1.81
416064--416125	20	3.2	20	81	4	81	51	17	19	11	1.75
416062--416185	33	3.5	35	79	11	121	48	22	19	9	1.78
416088--416185	33	2.9	33	86	1	124	47	25	17	9	1.77
416155--416200	20	2.3	20	92	3	76	43	28	15	13	1.83
416200--416293	33	2.8	33	90	0	143	10	21	21	46	1.81
416197--416293	19	5.7	18	63	22	57	10	21	21	46	1.81
418103--418138	14	2.6	14	95	0	63	33	0	22	44	1.53
418245--418303	19	3.4	18	71	22	54	47	18	22	11	1.81
418245--418324	33	2.4	33	91	0	124	47	21	21	10	1.79
418334--418423	33	2.7	33	94	0	144	12	24	18	44	1.84
418369--418423	19	3.2	19	70	24	66	12	21	18	47	1.82
420978--421029	24	2.2	24	82	0	59	36	21	19	23	1.95
421877--422146	20	13.3	20	80	7	192	33	17	20	28	1.95
421877--422146	41	6.7	40	74	6	186	33	17	20	28	1.95
421887--422146	61	4.3	60	78	3	243	34	17	20	27	1.95
422103--422145	21	2.0	21	86	4	59	37	16	25	20	1.93
423626--423683	20	2.8	20	82	15	64	24	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428716--428783	3	22.3	3	75	14	59	61	2	2	32	1.26
430196--430231	18	2.0	18	88	0	54	5	44	0	50	1.25
434790--434853	3	22.0	3	80	6	78	40	0	0	59	0.97
436332--436376	3	15.0	3	100	0	90	33	0	0	66	0.92
437160--437217	24	2.4	24	77	11	57	31	5	1	62	1.27
439429--439469	15	2.9	14	80	20	57	21	12	7	58	1.58
442227--442267	9	4.8	9	79	11	50	78	0	19	2	0.87
447017--447093	22	3.5	22	94	0	136	33	12	14	38	1.84
447771--448256	76	6.4	76	97	0	918	23	19	22	34	1.96
448414--448479	15	4.7	14	80	12	73	43	0	0	56	0.99

Tables:   1   2   3   4   5