genome.fa.s8270.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008270.1 Hibiscus syriacus cultivar Beakdansim tig00110927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  726180

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448412--448479	21	3.3	21	84	10	95	42	0	0	57	0.98
448412--448468	3	19.0	3	82	7	71	40	0	0	59	0.97
449963--450008	23	2.0	24	86	4	67	50	0	0	50	1.00
450147--450188	20	2.2	19	86	4	57	35	0	0	64	0.94
450045--450282	120	2.0	119	84	4	311	39	7	7	45	1.61
452294--452329	2	18.0	2	100	0	72	50	0	0	50	1.00
459121--459180	30	2.0	30	83	0	75	40	21	15	23	1.91
459136--459211	31	2.5	31	84	4	100	40	17	19	22	1.91
459692--459722	15	2.1	15	100	0	62	35	38	0	25	1.56
460825--460861	18	2.1	18	100	0	74	32	18	10	37	1.86
464354--464427	20	3.7	20	78	3	85	29	24	25	20	1.99
464460--464504	22	2.0	23	91	4	74	22	24	28	24	1.99
464449--464567	21	5.7	21	84	8	145	23	19	34	22	1.96
464449--464567	63	1.9	63	84	10	163	23	19	34	22	1.96
464636--464698	30	2.1	29	82	11	74	52	9	6	31	1.59
465885--465947	23	3.0	21	70	9	56	28	15	3	52	1.58
467386--467430	22	2.0	23	91	4	74	22	24	28	24	1.99
467374--467472	21	4.8	20	84	10	119	22	20	34	23	1.97
467541--467603	30	2.1	29	82	11	74	50	11	6	31	1.63
468277--468338	30	2.0	31	87	3	90	30	20	22	25	1.98
472309--472362	23	2.3	23	80	0	72	35	20	20	24	1.96
477335--477492	21	7.8	20	70	7	77	37	25	17	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477460--477652	20	9.6	20	84	5	246	34	27	19	18	1.95
478032--478102	33	2.2	33	94	0	124	11	23	16	47	1.79
478182--478288	21	5.6	20	73	17	102	46	18	21	13	1.83
478243--478299	14	3.7	14	75	20	60	43	22	24	8	1.81
478236--478315	33	2.4	33	95	0	142	47	22	21	8	1.78
478311--478438	19	7.1	19	71	19	87	10	25	18	45	1.82
478333--478389	14	3.7	14	75	20	60	8	24	22	43	1.81
478316--478438	33	3.5	33	88	10	165	10	24	18	46	1.81
478374--478438	21	3.1	21	82	4	96	10	26	15	47	1.78
480122--480437	93	3.4	93	99	0	623	22	13	18	45	1.85
480553--480609	14	3.7	14	72	20	51	43	24	22	8	1.81
480567--480658	19	5.4	18	72	24	65	46	28	17	7	1.75
480535--480658	33	3.7	33	91	1	185	45	27	17	8	1.78
480584--480642	14	3.9	14	76	20	64	47	28	16	6	1.72
480654--480826	19	9.6	19	76	12	159	10	20	23	45	1.81
480676--480732	14	3.7	14	75	20	51	10	22	22	43	1.84
480654--480826	33	4.8	38	80	8	168	10	20	23	45	1.81
482750--482785	14	2.6	14	95	0	63	33	0	22	44	1.53
482876--482963	19	4.8	19	82	14	123	47	15	22	13	1.81
482876--482978	53	2.0	53	94	1	181	46	16	21	15	1.84
482980--483266	72	4.1	69	77	15	268	13	21	18	46	1.83
482980--483247	105	2.5	109	91	7	421	13	22	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482980--483247	53	5.1	52	89	8	402	13	22	17	46	1.83
485718--485764	24	2.0	24	87	8	69	38	21	14	25	1.92
486456--486684	20	11.4	20	87	1	253	19	17	25	36	1.94
496758--496809	21	2.5	21	81	3	61	38	19	25	17	1.93
496798--496932	20	6.7	20	77	7	103	33	22	17	25	1.96
496795--496932	61	2.3	61	83	0	177	34	22	17	25	1.95
497100--497143	22	2.0	22	95	0	79	20	45	15	18	1.85
497397--497455	20	3.0	20	87	0	73	16	18	22	42	1.89
498775--498819	18	2.5	18	88	0	72	26	44	15	13	1.83
499301--499367	20	3.4	20	81	2	73	38	23	22	14	1.92
499340--499401	19	3.5	19	75	20	80	45	20	19	14	1.85
499415--499472	14	3.9	14	79	16	71	10	17	24	48	1.78
499410--499521	33	3.4	33	93	1	181	12	16	21	49	1.79
499431--499490	18	3.5	18	74	21	74	13	18	20	48	1.81
499515--499558	20	2.2	20	91	0	70	13	25	25	36	1.92
499927--500015	42	2.1	42	85	0	124	21	43	13	21	1.86
501430--501465	14	2.6	14	90	0	54	30	0	22	47	1.52
501602--501650	19	2.6	19	93	0	80	51	14	18	16	1.77
501676--501726	20	2.5	20	90	0	84	15	25	23	35	1.94
501942--502053	20	5.5	20	74	5	73	23	18	19	38	1.93
502019--502070	20	2.5	21	87	3	70	21	23	17	38	1.93
502855--502908	24	2.2	24	93	0	90	22	14	20	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505398--505524	33	3.8	33	86	4	193	42	18	22	15	1.89
505399--505531	66	2.0	66	95	0	239	41	18	22	17	1.90
507068--507134	21	3.2	21	68	4	55	19	20	35	23	1.95
507068--507190	42	2.9	41	79	7	113	22	18	36	21	1.95
507408--507592	91	2.0	90	89	6	282	47	17	12	22	1.81
509295--509393	33	3.0	33	93	1	162	40	22	25	12	1.88
509270--509448	52	3.4	52	82	10	204	43	19	24	12	1.86
509270--509448	19	10.1	19	70	19	127	43	19	24	12	1.86
509444--509510	19	3.5	19	85	2	89	10	16	25	47	1.78
510029--510142	20	5.7	20	83	6	122	25	18	24	31	1.97
510029--510145	61	1.9	61	87	0	171	24	17	23	33	1.97
510029--510163	61	2.2	61	82	2	164	23	20	23	32	1.98
512137--512185	21	2.2	21	82	7	62	42	14	2	40	1.57
512140--512180	21	1.9	22	90	5	66	41	14	2	41	1.59
512494--512533	18	2.2	19	86	4	55	40	0	2	57	1.12
513289--513372	28	2.9	29	92	3	143	13	34	30	21	1.91
513390--513449	23	2.6	23	86	0	84	10	38	26	25	1.87
513437--513474	20	1.9	20	94	0	67	13	28	34	23	1.92
513513--513570	29	2.0	29	86	6	82	24	27	34	13	1.93
515319--515373	2	27.5	2	100	0	110	49	0	50	0	1.00
516577--516617	21	1.9	22	90	5	66	43	2	2	51	1.28
516766--516826	30	2.0	30	87	9	88	36	6	14	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516766--516826	29	2.0	30	90	6	97	36	6	14	42	1.72
517392--517461	34	2.1	32	86	5	95	31	15	30	22	1.95
520271--520339	30	2.2	30	85	15	95	34	5	17	42	1.73
520280--520339	30	2.0	30	93	6	104	33	6	16	43	1.74
520505--520577	20	3.7	20	89	7	112	20	32	17	28	1.96
521699--521734	17	2.2	17	90	5	56	19	5	5	69	1.29
528585--528622	20	1.9	20	88	0	58	26	34	26	13	1.93
528587--528669	19	4.2	19	73	22	55	22	30	28	18	1.97
539847--539955	42	2.6	42	84	5	132	37	12	14	34	1.85
540581--540611	2	15.5	2	100	0	62	48	0	0	51	1.00
540611--540639	2	14.5	2	100	0	58	0	0	48	51	1.00
540712--540755	23	1.9	23	85	0	61	18	15	25	40	1.90
541232--541471	119	2.0	119	95	1	437	39	9	9	41	1.70
542056--542094	19	2.1	19	86	13	55	58	5	5	30	1.41
542605--542674	24	2.9	24	76	0	68	45	17	10	27	1.80
542580--542674	48	2.0	47	83	2	118	45	15	12	26	1.82
543350--543503	29	5.3	29	85	4	163	41	21	5	31	1.75
543368--543502	57	2.4	57	85	8	177	42	20	5	31	1.74
543480--543561	29	2.8	29	96	0	146	45	21	6	26	1.75
543394--543516	58	2.1	57	82	8	142	43	18	5	32	1.74
543562--543594	17	1.9	17	100	0	66	12	24	42	21	1.86
549835--549904	24	2.9	24	76	0	68	45	17	10	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549810--549904	48	2.0	47	85	2	127	45	16	12	25	1.83
550622--550692	28	2.5	29	93	2	117	42	19	7	30	1.78
550658--550728	37	2.0	35	86	10	99	46	15	7	30	1.72
550710--550791	29	2.8	29	80	7	94	47	20	4	26	1.70
550792--550831	17	2.4	17	95	0	71	15	22	42	20	1.88
551706--551731	6	4.3	6	100	0	52	15	0	69	15	1.20
551736--551768	15	2.1	16	88	11	50	48	0	0	51	1.00
556839--556873	18	1.9	18	100	0	70	25	34	22	17	1.96
560929--560984	21	2.7	21	100	0	112	28	8	5	57	1.52
563869--563911	2	21.5	2	100	0	86	51	0	0	48	1.00

Tables:   1   2   3   4   5