genome.fa.s8270.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008270.1 Hibiscus syriacus cultivar Beakdansim tig00110927_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  726180

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566736--567049	157	2.0	156	94	4	553	29	18	13	38	1.89
567523--567557	17	2.0	18	88	5	54	51	8	8	31	1.63
575697--575852	41	3.8	41	84	5	179	26	25	15	33	1.95
579943--579986	14	3.1	15	84	12	58	25	6	25	43	1.79
582632--582674	21	2.0	22	86	4	61	53	0	0	46	1.00
582570--582668	31	3.6	27	68	22	71	53	1	1	44	1.14
582684--582728	23	1.9	24	82	13	58	37	4	6	51	1.49
589001--589040	15	2.4	18	76	23	52	5	37	0	57	1.21
594319--594551	113	2.1	113	98	0	448	20	18	18	42	1.89
596559--596645	45	1.9	45	85	0	120	21	20	33	24	1.97
596568--596664	45	2.2	45	83	3	115	22	16	32	27	1.96
609621--609682	28	2.2	29	85	8	83	20	20	19	38	1.93
610186--610230	18	2.4	19	88	7	65	28	20	4	46	1.69
611857--611889	6	5.5	6	100	0	66	15	33	0	51	1.43
614101--614148	3	15.7	3	83	12	62	62	0	0	37	0.95
614098--614137	19	2.1	19	95	0	71	60	0	0	40	0.97
614287--615153	76	11.4	76	96	0	1556	36	21	19	22	1.95
615156--615483	168	2.0	168	90	4	529	38	11	13	35	1.81
615997--616051	22	2.5	22	90	0	92	38	16	10	34	1.84
618543--618883	114	3.0	114	91	0	556	30	20	15	33	1.94
621124--621164	15	2.8	14	88	7	55	0	14	0	85	0.60
626051--626098	16	2.9	16	81	3	60	72	0	2	25	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628325--628369	3	14.7	3	82	13	56	62	0	0	37	0.96
633278--633324	21	2.2	21	96	0	85	34	0	21	44	1.52
634295--634736	225	2.0	224	92	3	746	45	8	7	39	1.62
634806--634844	20	2.0	20	100	0	78	56	12	15	15	1.68
634964--635012	19	2.7	18	90	9	82	53	8	18	20	1.70
639716--639776	21	3.2	21	62	33	55	47	14	4	32	1.66
639707--639777	36	2.0	35	94	2	124	46	15	5	32	1.69
643739--643783	16	2.8	16	96	0	81	35	26	4	33	1.77
651276--652610	201	6.7	201	93	1	2231	31	18	14	36	1.91
651276--652610	200	6.7	199	93	2	2123	31	18	14	36	1.91
654491--654529	18	2.3	17	86	8	53	15	15	2	66	1.36
654798--654850	21	2.5	21	100	0	106	13	33	9	43	1.76
657082--657127	20	2.3	19	78	10	56	19	13	10	56	1.66
658419--658447	2	14.5	2	100	0	58	51	0	0	48	1.00
661732--662498	6	128.7	6	97	2	1467	66	16	0	16	1.26
664134--664194	32	1.9	32	83	9	81	63	11	0	24	1.27
664170--664271	19	5.4	19	64	25	54	58	12	0	27	1.41
664182--664308	44	3.2	43	65	28	116	59	12	1	25	1.42
664116--664311	76	2.6	76	93	4	353	60	12	1	26	1.39
666096--666127	16	2.0	16	93	0	55	6	21	12	59	1.55
666286--666387	5	19.8	5	68	16	57	69	2	4	22	1.21
666286--666332	19	2.4	20	89	3	69	72	0	4	23	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666353--666387	15	2.2	16	95	5	63	80	2	0	17	0.84
666341--666388	11	4.5	11	84	10	55	77	4	2	16	1.03
671827--671865	19	2.1	19	85	0	51	74	0	10	15	1.07
671945--671978	17	2.0	17	88	0	50	73	2	0	23	0.97
672585--672793	76	2.8	76	95	2	368	59	11	1	27	1.42
674895--674973	22	3.6	22	77	14	74	31	26	22	18	1.97
674898--674973	23	3.5	22	79	13	77	31	25	23	19	1.98
675150--675199	21	2.4	21	86	6	66	30	20	10	40	1.85
679000--679039	20	2.0	20	100	0	80	35	0	25	40	1.56
680300--680349	22	2.3	22	100	0	100	40	26	8	26	1.83
681480--681563	43	1.9	43	85	4	114	46	7	8	38	1.62
688264--688337	20	3.7	20	78	5	78	29	24	20	25	1.99
688513--688555	22	2.0	22	100	0	86	25	41	13	18	1.88
688941--689041	20	5.5	19	77	14	79	11	16	22	48	1.79
688954--689019	33	2.0	34	84	3	89	12	21	24	42	1.86
690723--690772	18	2.8	18	100	0	100	32	20	6	42	1.76
690990--691045	20	2.8	20	94	0	94	19	19	25	35	1.95
690990--691052	20	3.3	18	85	12	81	17	19	26	36	1.94
691548--691607	18	3.2	18	83	7	75	23	31	20	25	1.98
691576--691667	21	4.6	20	75	9	64	23	34	19	21	1.96
691591--691682	42	2.2	42	84	3	114	25	34	17	22	1.96
693060--693121	14	4.3	14	79	6	70	37	0	16	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
693062--693116	29	1.9	29	85	3	76	34	0	18	47	1.49
693220--693271	20	2.7	20	79	8	63	44	26	15	13	1.84
693316--693466	20	7.8	20	77	8	134	28	19	20	31	1.97
693316--693466	40	3.9	40	76	10	152	28	19	20	31	1.97
693284--693466	94	1.9	94	84	4	244	26	20	19	33	1.97
693632--693672	18	2.3	18	86	0	64	17	2	29	51	1.58
695706--695742	14	2.6	14	91	4	56	5	21	21	51	1.68
695944--695990	24	2.0	24	91	0	76	36	14	21	27	1.93
696809--696899	20	4.6	20	86	5	87	26	19	20	32	1.97
699328--699369	22	1.9	22	95	0	75	30	21	23	23	1.99
707532--707655	63	1.9	64	88	6	189	34	29	20	16	1.94
708788--708820	17	1.9	17	93	0	57	45	3	6	45	1.43
710087--710124	20	2.0	20	89	5	60	34	13	5	47	1.65
715188--715245	21	3.1	18	76	13	62	34	6	8	50	1.60
715205--715245	21	2.0	21	95	0	73	31	7	7	53	1.56
715205--715251	21	2.2	21	88	3	67	34	8	6	51	1.58
715463--715537	19	3.8	20	86	10	100	20	41	24	14	1.89
718134--718165	12	2.7	12	95	0	55	15	43	0	40	1.47
720742--720867	55	2.3	55	91	2	200	30	23	24	22	1.99
722283--722320	19	2.0	20	84	5	51	73	15	0	10	1.09
724157--724202	23	2.0	23	95	0	83	30	19	8	41	1.82

Tables:   1   2   3   4   5

The End!