genome.fa.s8311.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008311.1 Hibiscus syriacus cultivar Beakdansim tig00111002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1790494

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 882 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246026--246535	266	1.9	266	97	0	975	30	9	19	40	1.84
246519--246562	20	2.2	20	80	11	56	34	0	15	50	1.45
249999--250084	37	2.5	35	83	10	106	20	11	27	39	1.88
249999--250097	37	2.9	34	79	13	98	21	12	29	37	1.89
250018--250094	37	2.1	37	87	0	109	20	14	29	35	1.92
250674--250719	23	2.0	23	87	8	67	34	0	0	65	0.93
250778--250913	16	8.4	16	80	1	92	11	13	30	44	1.79
250770--250913	32	4.5	32	81	1	135	11	13	31	44	1.78
250778--250872	49	1.9	49	82	0	118	12	12	31	43	1.80
254528--254572	20	2.2	20	84	0	54	26	20	20	33	1.97
257108--257148	16	2.7	15	85	7	64	31	17	17	34	1.93
258826--258854	2	14.5	2	100	0	58	48	0	0	51	1.00
263586--263722	65	2.1	65	90	4	215	26	24	18	30	1.98
263586--263742	65	2.4	64	87	5	201	26	23	19	30	1.98
265664--265705	21	2.0	21	86	9	59	57	4	4	33	1.41
280375--280407	8	4.1	8	100	0	66	0	60	0	39	0.97
285135--285201	37	1.9	35	85	11	93	31	4	31	32	1.78
288210--288267	19	3.1	19	89	0	89	31	34	15	18	1.93
288310--288363	21	2.6	21	85	8	74	27	20	20	31	1.97
288352--288462	41	2.7	41	88	2	125	31	26	20	21	1.98
288372--288446	21	3.7	20	77	16	82	30	28	21	20	1.98
288393--288479	20	4.3	20	84	8	122	28	27	20	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288393--288508	61	1.9	61	85	0	160	31	24	19	25	1.98
288637--288698	22	2.8	22	87	0	97	19	45	16	19	1.86
289037--289119	33	2.5	34	88	2	132	19	20	24	36	1.95
289091--289139	20	2.5	20	86	0	62	20	18	24	36	1.94
289124--289162	20	2.0	20	89	0	60	10	10	20	58	1.59
289126--289171	20	2.3	20	84	0	56	13	10	19	56	1.66
289875--289934	21	2.8	22	75	7	61	23	41	15	20	1.89
289874--289965	42	2.2	42	82	3	105	23	35	17	22	1.95
291328--291394	30	2.2	31	97	2	127	29	2	13	53	1.54
291366--291481	54	2.1	55	87	4	173	31	3	16	48	1.63
291544--291807	20	13.9	20	77	10	257	23	20	21	34	1.96
291561--291779	54	4.0	54	86	4	269	22	20	21	35	1.96
291585--291804	74	3.0	73	78	8	239	21	19	22	35	1.96
291982--292016	18	1.9	18	94	0	61	17	2	25	54	1.57
294277--294330	24	2.2	24	93	0	90	40	20	18	20	1.91
295066--295172	20	5.3	20	80	0	124	25	17	25	31	1.97
295181--295233	20	2.7	20	96	0	97	20	20	18	39	1.92
295221--295274	21	2.6	20	82	8	63	35	20	16	27	1.94
295238--295282	21	2.1	21	84	8	56	44	17	17	20	1.87
295306--295352	19	2.4	19	82	3	58	25	14	29	29	1.95
295318--295354	19	1.9	19	94	0	65	21	16	29	32	1.95
295514--295540	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295675--295709	14	2.5	14	100	0	70	28	45	0	25	1.54
295849--295893	17	2.6	17	92	0	72	37	8	40	13	1.76
296006--296070	3	21.3	3	76	14	62	33	3	0	63	1.10
296021--296082	15	4.3	15	76	15	60	33	4	0	61	1.17
296006--296086	27	3.0	27	80	7	85	35	4	0	59	1.19
297549--297654	30	3.6	29	81	2	122	21	11	8	58	1.59
299992--300038	6	7.5	6	81	11	51	17	17	12	53	1.73
299992--300031	21	2.0	20	90	5	62	17	17	15	50	1.79
300639--300701	25	2.5	26	89	5	94	49	22	3	25	1.65
302482--302564	32	2.6	32	82	3	105	30	10	27	31	1.91
302679--302824	36	4.0	36	75	11	138	30	17	12	39	1.87
302839--303089	129	1.9	130	86	0	351	28	12	17	41	1.86
302777--303089	65	4.9	65	82	6	338	29	13	16	40	1.87
303224--303375	40	3.8	39	78	16	166	23	38	18	19	1.93
303256--303412	43	3.7	43	79	14	191	24	35	19	20	1.95
303224--303412	83	2.3	83	91	0	297	23	35	19	21	1.95
303665--303743	3	25.3	3	80	12	88	34	2	0	63	1.08
303665--303730	10	5.5	12	73	24	59	36	3	0	60	1.12
305241--305342	30	3.5	30	84	5	120	19	13	5	60	1.53
306461--306616	58	2.7	58	95	0	285	41	12	16	30	1.84
308435--308472	12	3.2	12	92	0	67	7	15	50	26	1.72
308435--308489	24	2.3	24	90	0	83	12	14	47	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321873--322061	95	2.0	94	86	7	267	33	16	23	26	1.95
321873--322086	95	2.3	93	84	8	238	33	16	23	26	1.96
322402--322827	55	7.7	55	85	4	538	31	19	18	30	1.96
322412--322827	165	2.5	165	90	2	631	31	19	18	30	1.96
329210--329836	55	11.4	55	81	7	661	31	19	18	30	1.96
329212--329836	165	3.8	163	86	5	794	31	19	18	30	1.96
329212--329836	110	5.7	110	84	3	746	31	19	18	30	1.96
330411--330513	54	1.9	54	85	0	143	27	19	21	32	1.97
330900--331077	95	1.9	91	85	4	239	28	23	12	35	1.91
337111--337539	54	8.1	54	81	3	456	27	18	19	34	1.95
337111--337539	105	4.0	107	84	2	515	27	18	19	34	1.95
346095--346240	56	2.6	55	90	4	220	37	13	17	32	1.88
353931--354134	56	3.6	56	91	0	327	34	13	18	33	1.90
359196--359228	2	16.5	2	100	0	66	48	0	0	51	1.00
360876--360900	12	2.1	12	100	0	50	44	8	8	40	1.63
361594--361624	16	1.9	16	93	0	53	54	6	0	38	1.26
361645--361684	21	2.0	21	85	14	57	40	0	2	57	1.12
362215--362257	19	2.3	19	87	0	59	58	4	0	37	1.19
362319--362362	21	2.2	19	84	8	52	70	0	6	22	1.11
362399--362446	17	2.9	17	87	3	71	75	0	4	20	0.97
362400--362449	25	2.1	23	88	7	73	74	0	4	22	0.99
362971--363046	37	2.1	37	89	0	116	42	39	1	17	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363017--363060	21	2.1	21	83	8	54	52	36	0	11	1.38
363719--363795	36	2.1	37	88	7	113	48	9	0	42	1.35
363798--363916	38	3.2	37	83	6	136	43	9	2	44	1.49
363798--363961	37	4.5	36	80	11	140	42	9	3	45	1.51
364807--365276	85	5.5	84	89	1	634	25	18	20	35	1.95
371734--371763	14	2.1	14	93	0	51	80	3	13	3	0.97
374977--375036	22	2.7	22	86	2	84	73	0	3	23	0.98
375053--375090	9	4.2	9	80	12	51	76	0	0	23	0.79
375055--375098	21	2.1	21	91	0	70	72	0	2	25	0.96
376334--376856	73	7.6	70	78	13	324	43	7	4	44	1.52
376327--376861	34	15.6	35	79	15	466	44	7	4	44	1.51
376644--376856	38	5.8	39	77	15	124	44	7	3	44	1.50
376858--376896	2	20.0	2	85	15	55	48	2	0	48	1.15
378041--378091	3	16.7	3	76	11	50	29	3	0	66	1.09
378038--378107	21	3.4	19	75	11	50	32	4	0	62	1.14
381059--381083	13	1.9	13	100	0	50	84	0	8	8	0.79
387866--387912	18	2.6	18	96	0	85	36	4	17	42	1.68
388041--388101	23	2.7	23	89	2	79	22	31	26	19	1.98
388057--388101	23	2.0	23	100	0	90	22	31	26	20	1.98
389979--390004	10	2.6	10	100	0	52	34	0	19	46	1.50
392460--392565	39	2.7	39	80	13	137	45	0	16	37	1.48
410424--410492	22	3.0	22	91	4	102	33	15	11	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416821--416879	30	2.0	31	87	12	88	32	6	23	37	1.81
420480--420524	17	2.7	17	86	3	56	33	17	17	31	1.94
429516--429561	24	2.0	24	91	4	76	32	8	10	47	1.69
430146--430187	18	2.3	18	95	0	75	14	28	50	7	1.69
433491--433519	11	2.5	12	94	5	51	44	0	3	51	1.18
434864--434907	23	1.9	23	85	0	61	18	20	22	38	1.93
434895--434940	24	1.9	24	86	0	65	23	23	21	30	1.99
441729--441787	23	2.6	22	73	5	64	22	22	22	33	1.97
441728--441830	24	4.4	23	74	7	93	20	22	24	33	1.97
450146--450235	40	2.2	40	84	3	119	37	14	17	30	1.90

Tables:   1   2   3   4   5   6   7   8