genome.fa.s8311.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008311.1 Hibiscus syriacus cultivar Beakdansim tig00111002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1790494

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 882 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793982--794045	12	5.4	12	81	9	60	4	14	0	81	0.85
793995--794049	5	10.4	5	80	18	58	3	14	0	81	0.82
793995--794049	11	5.2	11	83	12	71	3	14	0	81	0.82
793982--794036	28	2.0	28	88	0	83	3	16	0	80	0.86
793990--794037	23	2.1	23	92	0	78	2	16	0	81	0.79
807762--808060	55	5.4	55	86	2	352	35	12	18	33	1.88
819859--819909	26	2.0	26	88	0	75	27	21	21	29	1.99
822488--822563	22	3.6	22	91	5	122	35	15	15	32	1.90
822919--823178	55	4.7	55	89	0	387	34	11	18	34	1.88
823579--823629	25	1.9	26	84	11	68	35	3	9	50	1.54
825282--825318	19	1.9	19	100	0	74	21	0	35	43	1.53
828767--828842	36	2.1	36	97	0	143	31	10	14	43	1.79
829878--829956	3	27.0	3	89	5	126	34	0	1	64	1.02
830425--830463	17	2.3	17	100	0	78	10	10	53	25	1.66
831026--831077	14	3.8	14	85	7	63	36	0	1	61	1.07
831048--831098	24	2.1	24	82	13	61	39	3	0	56	1.18
831922--831982	8	7.2	9	75	17	51	36	1	0	62	1.05
836258--836300	20	2.2	20	86	0	59	30	13	20	34	1.92
845269--845311	20	2.2	20	86	0	59	30	13	20	34	1.92
855436--855498	17	3.4	17	72	19	63	47	7	23	20	1.76
855417--855837	113	3.7	113	91	3	595	37	13	21	28	1.91
855441--855981	226	2.3	232	84	9	669	38	13	20	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855701--855965	130	2.1	128	88	4	390	40	12	20	26	1.88
855814--855854	17	2.4	17	100	0	82	51	4	24	19	1.66
856175--856240	3	22.0	3	77	0	51	28	0	6	65	1.17
856175--856239	21	3.2	21	76	10	64	27	0	6	66	1.15
857608--857651	23	1.9	23	81	9	54	38	2	0	59	1.10
861869--861907	16	2.4	17	83	12	55	41	0	2	56	1.13
861898--861928	14	2.3	14	94	5	55	19	0	0	80	0.71
863800--863842	15	2.8	15	78	3	50	69	0	0	30	0.88
863820--863856	18	2.1	18	90	5	58	59	0	2	37	1.12
865567--865641	27	2.8	27	88	9	118	26	17	25	30	1.97
875332--875449	45	2.6	46	85	2	150	27	21	7	44	1.79
875491--876227	81	9.1	81	90	0	1021	32	19	10	37	1.87
876639--876716	22	3.6	22	73	13	72	24	21	15	38	1.92
886171--886265	3	32.3	3	69	4	59	53	3	2	41	1.28
886193--886267	20	3.7	20	80	5	78	50	2	2	44	1.30
886227--886272	20	2.3	20	92	0	74	52	0	2	45	1.13
886439--886814	53	7.1	53	87	1	524	20	26	21	31	1.98
887186--887267	42	2.0	42	82	0	101	29	21	21	26	1.99
887146--887393	135	1.8	135	86	0	361	28	20	18	32	1.96
887317--887410	42	2.2	42	79	7	127	35	18	20	26	1.95
897410--897466	20	2.8	20	89	2	78	52	1	3	42	1.28
897425--897471	14	3.3	15	85	11	55	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897741--897802	24	2.6	24	89	0	97	48	12	6	32	1.67
904698--904723	13	2.0	13	100	0	52	61	7	15	15	1.55
904669--904819	58	2.7	56	75	16	145	42	10	9	37	1.73
905095--905309	58	3.7	58	76	9	188	43	11	6	39	1.65
905265--905412	51	2.8	51	82	8	167	41	8	6	43	1.61
905593--905796	45	4.5	44	82	6	205	36	11	9	42	1.74
905593--905799	90	2.3	90	81	5	240	37	11	9	41	1.74
909133--909204	3	23.7	3	97	2	135	66	0	0	33	0.92
909556--909601	22	2.2	21	84	7	58	50	15	13	21	1.78
909581--909657	30	2.6	30	97	0	145	46	10	14	28	1.77
909603--909761	68	2.3	67	82	11	182	43	13	15	27	1.85
909717--909797	36	2.2	36	86	0	108	43	13	19	23	1.87
916273--916321	16	3.1	15	78	18	55	75	4	6	14	1.14
918602--918673	15	4.6	17	77	16	66	70	9	18	1	1.21
918623--918679	30	1.9	29	92	3	96	75	8	15	0	1.04
918628--918677	10	5.0	10	75	18	50	76	10	14	0	1.03
919644--919707	32	2.0	32	87	0	92	26	10	28	34	1.90
920124--920353	83	2.7	85	80	7	236	26	35	16	22	1.94
920214--920352	40	3.4	39	71	13	118	24	35	16	23	1.94
921947--922005	31	2.1	28	81	15	68	18	20	30	30	1.96
922743--922820	30	2.6	29	88	9	113	23	11	3	61	1.46
925619--925655	18	2.0	19	85	15	51	18	8	13	59	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
926535--926597	22	2.8	22	74	11	65	73	7	19	0	1.08
926535--926566	15	2.1	15	100	0	64	71	6	21	0	1.07
926535--926595	14	4.0	15	80	14	54	72	8	19	0	1.10
926547--926599	14	3.6	14	82	7	61	75	7	16	0	1.02
928683--928730	3	16.0	3	83	16	64	35	0	0	64	0.94
928683--928732	19	2.6	19	84	15	75	36	0	0	64	0.94
929403--929435	2	16.5	2	100	0	66	51	0	48	0	1.00
930445--930536	30	3.1	30	88	0	139	17	9	8	64	1.48
930431--930558	60	2.1	61	82	1	159	18	15	9	56	1.66
932600--932630	15	2.0	16	93	6	55	61	0	0	38	0.96
933184--933230	20	2.4	20	79	10	53	48	0	4	46	1.21
952957--952997	21	1.9	22	90	5	66	24	17	19	39	1.92
964478--964518	21	2.0	21	90	4	66	43	31	0	24	1.54
969692--969729	14	2.7	14	95	0	67	39	34	2	23	1.69
971359--971391	3	11.0	3	100	0	66	33	0	0	66	0.92
978042--978071	3	10.3	3	92	7	53	30	0	0	70	0.88
985318--985364	22	2.2	21	82	10	60	46	6	2	44	1.40
985342--985446	43	2.5	42	82	13	135	41	5	4	47	1.48
985491--985515	12	2.1	12	100	0	50	52	8	0	40	1.31
985348--985527	43	4.5	40	69	20	119	42	8	3	46	1.50
985522--985551	12	2.5	12	94	0	51	40	0	0	60	0.97
992765--992805	2	21.0	2	95	5	75	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994287--994410	21	5.7	21	77	14	126	24	8	23	44	1.80
994282--994414	44	3.0	44	87	0	203	24	7	24	42	1.80
996157--996268	42	2.7	41	79	5	118	26	23	18	31	1.98
995925--997076	255	4.6	254	85	4	1555	33	16	16	33	1.92
997432--997459	3	9.3	3	100	0	56	32	0	0	67	0.91
997675--997720	18	2.6	18	92	0	74	6	41	21	30	1.78
997980--998037	24	2.3	25	82	5	73	75	3	15	5	1.11
997976--998028	27	2.0	26	89	7	81	77	3	15	3	1.06
998944--998982	2	20.0	2	94	5	71	51	0	0	48	1.00
999495--999850	131	2.7	131	90	0	570	32	11	17	39	1.86
1001814--1001892	23	3.4	23	74	10	72	41	1	2	54	1.22
1002007--1002079	23	3.2	23	79	11	80	57	0	0	42	0.98
1004631--1004697	3	21.7	3	76	14	57	35	0	0	64	0.94
1006220--1006286	30	2.2	31	81	5	75	28	8	1	61	1.35
1014239--1014268	7	4.3	7	95	0	51	16	16	0	66	1.25
1027307--1027354	12	4.0	12	72	0	51	16	12	18	52	1.75
1031185--1031264	24	3.3	24	78	3	90	22	13	17	46	1.83
1032329--1032372	2	24.0	2	78	17	51	43	0	0	56	0.99
1032330--1032409	9	9.3	9	75	17	73	40	0	1	58	1.06
1032336--1032435	6	16.8	6	67	23	52	38	0	1	61	1.03
1032379--1032438	9	7.0	9	77	11	63	40	0	0	60	0.97
1032395--1032447	24	2.2	24	79	0	61	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032479--1032533	24	2.3	24	93	0	92	43	18	10	27	1.83
1033976--1034042	30	2.2	31	81	5	75	28	8	1	61	1.35
1035273--1035307	18	1.9	18	88	0	52	37	17	11	34	1.85
1042181--1042224	12	3.6	12	81	3	52	27	20	2	50	1.60
1046244--1046279	2	18.0	2	100	0	72	50	0	0	50	1.00
1048991--1049040	21	2.3	22	89	6	75	48	18	8	26	1.75
1050263--1050317	25	2.1	27	83	6	69	72	5	3	18	1.18
1050976--1051039	20	3.2	20	78	8	85	15	45	9	29	1.78
1050960--1051050	40	2.3	40	90	0	155	13	37	12	37	1.82
1059241--1059271	14	2.2	14	94	0	53	64	19	6	9	1.45

Tables:   1   2   3   4   5   6   7   8