Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008311.1 Hibiscus syriacus cultivar Beakdansim tig00111002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1790494

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 882 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1712585--1712649
8
7.9
8
75
17
55
36
0
6
56
1.24
1712593--1712621
6
4.8
6
100
0
58
34
0
13
51
1.42
1717425--1717692
54
5.0
54
86
0
349
27
15
20
36
1.93
1721004--1721273
54
5.0
53
85
1
333
27
15
20
36
1.93
1721000--1721272
108
2.5
108
88
0
393
27
15
20
36
1.93
1724543--1724814
54
5.0
55
87
2
320
28
16
19
36
1.93
1728086--1728356
54
5.0
54
84
3
314
27
15
19
37
1.92
1728085--1728357
107
2.5
107
84
4
334
27
15
20
36
1.93
1732831--1733573
54
13.8
54
85
4
808
27
17
20
34
1.95
1732831--1733573
108
6.9
108
85
5
927
27
17
20
34
1.95
1732809--1733573
269
2.8
270
86
3
1001
27
18
20
34
1.95
1734437--1734627
41
4.7
41
80
6
136
28
18
18
35
1.94
1734464--1734621
41
3.9
41
84
7
196
29
20
16
33
1.94
1737742--1737823
42
1.9
42
82
2
101
35
15
15
32
1.90
1739697--1739744
3
16.0
3
91
0
69
33
6
0
60
1.22
1740097--1740156
22
2.7
22
94
0
102
25
28
20
26
1.99
1741264--1741300
18
2.1
19
85
10
51
45
0
0
54
1.00
1742024--1742076
2
27.5
2
85
14
76
45
1
0
52
1.11
1743761--1743797
14
2.6
14
91
0
56
18
18
10
51
1.75
1746348--1746435
1
88.0
1
79
0
86
88
0
11
0
0.51
1746350--1746448
6
14.6
7
79
17
95
85
0
13
1
0.64
1746349--1746448
8
12.5
8
82
14
102
86
0
13
1
0.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1746351--1746435
25
3.5
25
82
9
122
88
0
11
0
0.52
1746349--1746448
47
2.1
49
92
3
168
86
0
13
1
0.64
1747029--1747090
32
1.9
32
93
0
106
43
16
19
20
1.88
1749500--1749672
75
2.3
75
84
7
233
31
16
20
30
1.95
1751220--1751353
36
3.7
36
75
5
135
32
17
11
39
1.85
1751221--1751365
73
2.0
73
93
0
245
33
17
11
37
1.86
1751220--1751371
36
4.2
36
71
7
119
34
17
10
37
1.84
1751510--1751572
17
3.4
17
70
19
54
50
7
22
19
1.72
1751919--1751981
3
21.0
3
90
0
99
34
3
0
61
1.12
1756099--1756161
27
2.3
27
100
0
126
12
14
33
39
1.84
1756099--1756169
27
2.6
27
93
4
108
12
16
30
39
1.86
1761175--1761208
18
2.0
16
88
11
50
61
0
8
29
1.26
1764273--1764307
15
2.3
15
90
0
52
22
45
17
14
1.84
1765713--1765753
15
2.7
15
92
0
64
21
2
19
56
1.54
1768159--1768290
42
3.2
42
94
1
221
52
18
4
25
1.64
1769051--1769092
20
2.0
21
90
4
68
30
16
9
42
1.80
1770693--1770761
30
2.3
31
84
2
86
37
24
4
33
1.75
1771458--1771534
31
2.5
31
91
0
127
37
31
3
27
1.75
1785072--1785102
7
4.4
7
91
0
53
16
12
3
67
1.35
1788435--1788503
24
2.9
24
95
0
120
21
15
27
34
1.94

Tables:   1   2   3   4   5   6   7   8

The End!