genome.fa.s8337.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008337.1 Hibiscus syriacus cultivar Beakdansim tig00111057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  840327

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 555 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320302--320886	86	7.0	86	84	8	665	52	11	0	35	1.38
320303--320931	140	4.5	140	89	5	958	52	11	0	35	1.38
320486--320534	22	2.2	22	85	3	62	55	12	0	32	1.37
320538--320580	22	2.0	22	100	0	86	51	13	0	34	1.42
320540--320588	22	2.2	22	88	3	71	55	14	0	30	1.40
320592--320634	22	2.0	22	95	0	77	51	11	0	37	1.39
320594--320642	22	2.2	22	85	3	62	55	12	0	32	1.37
320668--320711	22	2.0	22	86	0	61	56	4	0	38	1.20
320677--320720	22	2.0	22	95	0	79	54	11	0	34	1.36
320680--320728	22	2.2	22	85	3	62	59	12	0	28	1.34
320732--320774	22	2.0	22	95	0	77	51	11	0	37	1.39
320734--320782	22	2.2	22	85	3	62	55	12	0	32	1.37
320834--320931	32	3.4	32	71	26	108	52	9	0	38	1.34
320866--320966	22	4.5	22	70	7	85	50	8	0	40	1.34
320911--321028	15	7.5	15	81	13	139	50	2	0	46	1.14
320856--321013	69	2.3	67	86	6	212	50	5	0	43	1.25
322621--322653	11	3.1	11	86	4	50	42	27	12	18	1.85
322859--322909	11	4.5	11	75	18	50	27	25	23	23	2.00
324880--324934	6	9.2	6	95	0	92	30	49	16	3	1.63
325299--325627	165	2.0	163	97	2	615	33	19	17	29	1.95
330530--330578	6	8.2	6	95	0	80	30	48	16	4	1.64
335233--335281	6	8.2	6	95	0	80	30	48	16	4	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336510--336599	21	4.3	21	82	0	81	23	20	32	24	1.98
336546--336606	21	2.9	21	92	0	86	24	14	34	26	1.94
336512--336606	42	2.3	42	77	0	100	25	16	32	25	1.96
336945--336992	21	2.3	21	88	0	69	37	29	14	18	1.91
338658--338747	20	4.4	20	88	1	135	45	23	20	11	1.82
338759--338798	20	2.0	20	85	0	53	15	15	20	50	1.79
339316--339425	20	5.5	20	82	7	134	20	12	21	45	1.84
339316--339425	40	2.7	41	85	4	152	20	12	21	45	1.84
339316--339448	40	3.3	39	80	9	126	21	13	21	42	1.87
340943--340995	2	27.0	2	96	3	99	50	0	0	49	1.00
341623--341686	21	3.4	20	66	29	59	32	3	18	45	1.65
341616--341736	35	3.4	35	86	6	163	33	3	19	43	1.67
343963--343987	13	1.9	13	100	0	50	44	16	32	8	1.76
346174--346292	35	3.3	36	88	6	170	32	4	19	43	1.70
356164--356212	19	2.6	19	84	9	57	24	18	30	26	1.98
356158--356304	64	2.3	65	83	5	183	25	21	23	29	1.99
356158--356322	64	2.6	63	78	5	154	27	20	23	29	1.98
356335--356372	20	1.9	20	94	0	67	18	15	34	31	1.92
356963--356996	2	17.0	2	100	0	68	50	0	0	50	1.00
359122--359159	20	2.1	19	85	14	53	28	18	21	31	1.97
364864--364915	19	2.7	19	87	0	77	28	19	30	21	1.97
364903--365026	64	1.9	65	88	4	189	26	17	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365054--365091	20	1.9	20	94	0	67	18	15	34	31	1.92
369601--369626	13	2.0	13	100	0	52	15	7	38	38	1.76
379009--379040	16	2.0	16	93	0	55	65	18	9	6	1.42
379104--379156	16	3.3	16	89	0	79	58	16	11	13	1.63
379898--379926	14	2.1	14	100	0	58	48	27	17	6	1.72
379878--379911	10	3.4	10	87	0	50	55	20	11	11	1.67
382885--382942	29	2.0	29	89	0	89	13	34	27	24	1.93
382985--383017	14	2.4	14	94	0	57	24	39	30	6	1.79
383016--383080	33	2.0	33	90	6	105	26	24	38	10	1.88
383087--383142	29	1.9	29	100	0	112	19	30	39	10	1.86
383169--383208	20	2.0	20	100	0	80	20	30	10	40	1.85
388671--388695	13	1.9	13	100	0	50	32	0	4	64	1.12
389878--390812	217	4.3	217	94	0	1549	42	8	12	36	1.75
390727--390761	15	2.2	16	90	5	54	65	0	0	34	0.93
390831--390887	22	2.6	22	97	0	105	38	3	14	43	1.62
402576--402631	2	28.0	2	88	0	85	50	5	0	44	1.25
402576--402631	14	4.0	14	97	0	103	50	5	0	44	1.25
402722--402779	18	3.3	17	74	9	53	60	1	5	32	1.29
406093--406135	21	2.0	21	100	0	86	48	4	23	23	1.69
410365--410438	20	3.7	20	83	5	78	32	21	17	28	1.96
413014--413094	31	2.7	29	75	7	81	41	6	9	41	1.63
413204--413259	28	2.1	26	83	12	69	37	10	10	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415643--415667	11	2.3	11	100	0	50	44	0	0	56	0.99
418474--418629	64	2.4	64	84	8	210	31	23	17	26	1.97
420185--420338	40	3.8	40	85	3	193	28	29	21	20	1.98
420203--420319	22	5.7	22	69	19	99	29	29	22	19	1.98
420264--420337	18	3.9	18	78	13	76	28	33	20	17	1.95
420185--420335	80	1.9	80	88	0	230	29	29	21	19	1.98
420876--421038	63	2.6	63	83	1	173	25	20	20	33	1.97
427177--427286	18	5.9	18	80	8	121	30	34	19	16	1.93
427176--427286	40	2.9	38	83	12	131	29	34	18	17	1.94
432046--432125	21	3.7	21	77	14	81	31	18	21	28	1.97
432056--432105	24	2.1	24	88	0	73	32	20	20	28	1.97
432046--432140	45	2.1	44	84	9	122	29	20	21	29	1.98
434799--434946	64	2.3	65	87	6	212	30	22	17	29	1.97
440342--440801	251	1.8	251	90	1	735	27	11	18	41	1.86
441909--441945	18	2.1	18	89	0	56	70	13	0	16	1.17
443297--443412	60	1.9	60	85	0	160	42	1	21	34	1.63
443297--443442	60	2.5	60	82	1	159	43	4	19	33	1.70
445820--445893	32	2.3	32	90	2	112	14	9	33	41	1.79
448285--448318	16	2.1	16	88	0	50	50	0	2	47	1.16
448360--448393	16	2.0	18	88	11	54	26	2	5	64	1.30
448862--449109	130	1.9	130	93	0	424	35	12	15	36	1.86
449506--449581	35	2.2	35	92	0	125	35	1	23	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452215--452253	10	3.9	10	79	0	51	28	12	10	48	1.74
453320--453349	2	15.0	2	92	0	51	46	0	0	53	1.00
476245--476321	3	25.7	3	86	0	109	61	0	3	35	1.15
476575--477335	113	6.7	113	94	1	1208	28	19	13	38	1.89
477898--478089	50	3.8	50	99	0	375	39	21	13	25	1.90
477999--478239	133	1.8	133	100	0	482	36	21	14	28	1.92
478979--479023	18	2.6	17	89	6	65	55	6	6	31	1.52
479352--479425	10	7.7	10	82	8	82	0	17	0	82	0.67
479353--479416	27	2.5	27	92	7	107	0	17	0	82	0.66
479351--479425	37	2.1	35	92	5	123	0	18	0	81	0.69
490030--490071	18	2.4	17	84	11	50	69	4	0	26	1.08
492171--492256	3	28.7	3	87	0	127	61	0	3	34	1.13
497309--497447	69	2.0	69	98	0	269	17	23	25	33	1.96
501072--501117	22	2.1	22	100	0	92	21	13	36	28	1.91
504343--504395	17	3.0	17	70	20	54	39	3	1	54	1.29
510441--510591	7	21.6	7	100	0	302	27	28	14	29	1.95
516542--516715	91	1.9	89	94	2	303	37	19	19	22	1.94
518818--519051	75	3.1	75	86	2	335	27	20	24	28	1.99
520098--520159	30	2.1	30	96	0	115	46	8	27	17	1.76
520849--520890	18	2.3	19	91	4	68	50	0	9	40	1.35
523089--523241	64	2.4	64	89	0	225	32	33	9	24	1.88
526765--526822	20	2.8	20	82	12	64	25	32	18	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526842--526894	20	2.7	20	87	0	79	15	30	24	30	1.95
529992--530031	21	1.9	21	89	0	62	35	10	5	50	1.58
535721--535769	19	2.6	19	77	3	55	53	2	0	44	1.12
539377--539440	32	2.0	32	100	0	128	15	43	6	34	1.72
548752--548835	3	28.7	3	95	4	154	65	0	0	34	0.93
549048--549391	55	6.3	55	91	0	501	32	26	13	27	1.94
549377--549915	54	10.1	52	83	7	543	25	25	17	32	1.96
549397--549927	106	5.0	106	85	5	619	25	24	17	32	1.97
550304--550533	36	6.4	36	86	2	275	20	19	24	36	1.95
550304--550536	108	2.1	108	85	3	308	20	18	24	36	1.95

Tables:   1   2   3   4   5