genome.fa.s8337.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008337.1 Hibiscus syriacus cultivar Beakdansim tig00111057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  840327

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 555 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716154--716515	67	5.4	67	76	11	289	39	14	19	27	1.90
716658--716954	90	3.3	90	94	0	506	35	20	18	25	1.95
718827--718937	4	28.0	4	73	12	70	3	19	0	76	0.93
718870--718944	13	5.8	13	73	18	59	1	16	0	82	0.73
720150--720187	20	1.9	20	94	0	67	44	18	18	18	1.87
723049--723086	14	2.6	15	83	4	51	81	2	0	15	0.80
723322--723347	4	6.5	4	100	0	52	76	0	0	23	0.78
723651--723690	19	2.0	20	95	4	73	42	7	0	50	1.30
728196--728265	20	3.8	20	73	16	53	64	7	0	28	1.20
729778--729829	22	2.3	23	81	15	63	63	7	0	28	1.22
732883--732946	19	3.5	18	71	10	58	65	4	1	28	1.21
732940--732986	20	2.3	21	78	10	62	70	4	0	25	1.05
733431--733487	21	2.6	22	94	2	98	64	3	0	31	1.10
733533--733662	69	1.9	68	93	1	224	47	13	14	23	1.80
736948--736994	16	2.9	16	84	12	69	23	19	14	42	1.88
737265--737311	14	3.7	14	71	26	50	44	0	4	51	1.21
737264--737313	23	2.1	24	96	3	93	48	0	4	48	1.20
738004--738043	21	1.9	21	84	0	53	27	2	20	50	1.61
738140--738187	2	23.0	2	87	8	69	45	2	2	50	1.25
738106--738187	27	3.0	28	81	12	82	46	4	2	46	1.37
738544--738595	21	2.4	21	76	20	54	26	0	26	46	1.53
737673--738750	565	1.9	552	88	7	1612	37	8	10	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738657--738699	17	2.6	17	82	10	54	44	4	4	46	1.45
738672--738743	28	2.6	28	86	4	94	38	5	5	50	1.49
738672--738723	24	2.1	26	92	7	90	40	3	3	51	1.38
738672--738732	24	2.5	24	86	10	70	40	4	3	50	1.40
738688--738758	28	2.6	28	82	4	74	39	8	5	46	1.58
738772--738838	7	9.6	7	76	0	71	17	1	37	43	1.59
738893--738935	2	22.0	2	95	4	79	51	0	0	48	1.00
739413--739495	20	4.1	20	86	6	114	20	38	27	13	1.90
739413--739495	41	2.0	40	90	2	130	20	38	27	13	1.90
739843--739912	34	2.1	32	89	5	104	31	15	31	21	1.95
740269--740330	19	3.3	19	77	6	72	24	30	1	43	1.64
740688--740726	16	2.4	16	95	0	69	56	20	12	10	1.65
741820--741875	14	4.3	14	78	17	66	55	25	12	7	1.62
741813--741856	10	4.0	10	78	21	52	56	22	11	9	1.62
741800--741874	24	3.1	24	88	0	105	57	21	10	10	1.62
742051--742117	17	3.9	17	81	14	68	47	1	2	47	1.26
742059--742123	2	33.5	2	73	17	57	47	1	1	49	1.20
744479--744582	6	17.3	6	87	4	138	46	0	5	48	1.26
744479--744582	10	10.4	10	88	3	138	46	0	5	48	1.26
744479--744582	16	6.5	16	88	2	147	46	0	5	48	1.26
764827--764876	5	9.8	5	83	12	57	20	52	22	6	1.68
764827--764876	24	2.2	22	89	7	73	20	52	22	6	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
764825--764880	10	5.5	10	75	12	51	19	50	21	8	1.75
784335--784409	22	3.3	21	81	14	80	82	0	9	8	0.84
784356--784400	18	2.3	20	88	11	67	88	0	4	6	0.61
784356--784385	1	30.0	1	93	0	51	96	0	0	3	0.21
784348--784412	24	2.8	23	81	9	78	83	0	7	9	0.82
785572--786264	55	12.9	55	85	5	868	27	15	29	27	1.96
785572--786284	165	4.4	165	86	5	1032	27	15	29	27	1.96
788450--788488	20	2.1	18	85	9	51	23	0	12	64	1.28
790121--790148	3	9.3	3	100	0	56	67	0	0	32	0.91
804880--804946	19	3.6	19	73	4	64	7	23	1	67	1.25
810305--810410	12	8.8	12	77	12	101	43	21	6	28	1.78
810305--810411	36	3.0	36	85	8	146	42	21	6	28	1.78
811299--811416	32	3.7	31	87	3	155	32	20	17	29	1.96
815051--815185	64	2.1	64	88	2	200	31	17	23	27	1.96
815494--815529	13	2.8	14	84	16	51	38	11	8	41	1.71
815804--815887	29	3.1	27	79	16	77	59	21	1	17	1.44
815822--815888	29	2.4	28	85	9	84	58	20	1	19	1.48
817323--817365	13	3.3	13	87	6	61	44	9	11	34	1.73
817377--817407	14	2.2	14	100	0	62	67	12	0	19	1.22
817842--817945	44	2.4	44	85	3	147	28	21	21	28	1.98
823905--823934	13	2.4	13	94	5	53	43	0	30	26	1.55
829130--829165	18	1.9	19	88	5	56	16	25	16	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
830768--830901	63	2.1	64	87	4	191	29	17	23	28	1.97
833961--834024	11	5.8	11	78	7	67	10	10	23	54	1.67
833960--834024	22	3.0	22	86	0	85	10	10	23	55	1.65
834237--834277	12	3.4	12	89	0	64	48	19	12	19	1.80
834228--834283	24	2.3	24	85	8	78	42	16	17	23	1.88
835050--835088	2	19.5	2	100	0	78	48	0	0	51	1.00
836109--836164	21	2.9	18	80	14	67	44	5	1	48	1.36
836477--836514	19	2.1	18	85	14	51	39	5	2	52	1.38
840055--840171	57	2.0	59	81	6	141	41	17	14	26	1.88

Tables:   1   2   3   4   5

The End!