genome.fa.s8337.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008337.1 Hibiscus syriacus cultivar Beakdansim tig00111057_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  840327

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 555 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551256--551556	124	2.4	124	91	1	460	22	27	16	32	1.96
558881--558957	3	25.7	3	94	5	138	64	0	0	35	0.93
564783--564873	42	2.2	42	86	4	121	18	12	18	50	1.77
565099--565152	21	2.6	21	81	0	63	46	1	0	51	1.11
565098--565154	30	2.0	28	86	6	78	45	1	0	52	1.11
565115--565285	28	5.8	30	72	15	119	49	1	1	48	1.16
565188--565228	19	2.0	21	86	9	59	46	0	0	53	1.00
565280--565324	23	2.0	23	86	0	63	53	2	2	42	1.25
565632--565671	14	2.9	14	96	0	62	32	20	17	30	1.95
565625--565677	14	3.8	14	87	0	61	35	16	15	32	1.90
565681--565739	14	4.1	14	71	4	55	35	16	6	40	1.76
567437--567576	36	3.9	36	91	0	217	26	16	14	42	1.86
568182--568214	14	2.4	14	90	10	50	21	3	12	63	1.41
576819--576868	26	1.9	26	88	8	75	14	10	10	66	1.46
576816--576871	12	4.6	12	75	18	53	14	8	8	67	1.40
582238--582279	22	2.0	22	86	9	61	26	30	0	42	1.55
582827--582878	21	2.5	21	90	6	79	46	3	11	38	1.59
585769--586010	128	1.9	132	85	4	339	35	15	12	36	1.85
585920--586127	112	1.9	112	89	0	326	34	15	11	38	1.83
586853--586917	26	2.5	26	87	0	94	36	4	16	41	1.70
593528--593566	17	2.4	17	95	4	71	51	5	0	43	1.24
595052--595184	29	4.6	29	76	10	112	38	13	21	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595034--595144	58	1.9	57	83	5	143	37	12	22	27	1.90
595844--595896	21	2.5	21	96	0	97	30	16	26	26	1.97
598900--598978	31	2.5	31	81	6	79	40	18	3	36	1.69
612479--612516	11	3.5	11	85	0	58	39	23	5	31	1.77
612477--612521	22	2.1	21	95	4	81	42	22	4	31	1.73
612481--612528	22	2.2	22	88	7	71	45	22	4	27	1.70
613264--613308	22	2.1	21	91	4	72	42	20	4	33	1.72
613268--613315	22	2.2	22	85	7	62	45	20	4	29	1.70
612125--614491	787	3.0	787	97	0	4509	40	18	10	30	1.84
614051--614095	22	2.1	21	91	4	72	42	20	4	33	1.72
614055--614102	22	2.2	22	85	7	62	45	20	4	29	1.70
619456--619482	14	1.9	14	100	0	54	14	0	22	62	1.31
619970--620002	16	2.0	17	88	5	50	39	0	0	60	0.97
626891--626922	16	2.0	16	93	0	55	46	28	12	12	1.78
627075--627138	31	2.1	31	93	0	110	50	10	10	28	1.71
628723--628819	42	2.3	42	98	0	185	36	23	18	21	1.95
628678--628825	21	7.1	21	68	17	85	35	22	19	21	1.96
629409--629473	6	11.5	6	98	1	102	0	16	53	29	1.43
631262--631321	21	2.9	21	94	0	102	26	30	20	23	1.98
631330--631404	21	3.6	21	90	0	114	22	21	25	30	1.99
631574--631633	19	3.2	19	79	13	70	43	1	0	55	1.10
631924--632004	38	2.1	38	83	0	99	35	27	17	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632632--632657	7	3.7	7	100	0	52	88	0	0	11	0.52
633059--633474	187	2.2	187	84	3	527	39	10	16	33	1.83
644849--644923	30	2.5	29	84	2	96	37	5	1	56	1.31
644924--644982	31	1.9	31	83	10	77	52	1	3	42	1.28
644962--645008	24	1.9	25	91	4	78	55	0	4	40	1.19
644941--645013	26	2.6	28	75	14	80	53	0	2	43	1.15
646803--646851	4	12.2	4	95	0	89	26	0	73	0	0.83
649679--649731	21	2.5	21	87	0	79	20	24	18	35	1.95
649721--649773	20	2.7	20	96	0	97	37	22	20	18	1.94
649968--650033	22	3.0	22	86	0	87	25	37	13	22	1.91
650360--650432	34	2.2	34	85	7	96	13	17	26	42	1.87
650403--650472	20	3.5	20	86	0	95	18	14	25	41	1.88
652371--652421	20	2.5	20	83	0	75	41	21	15	21	1.90
652427--652475	19	2.7	18	81	9	55	38	18	22	20	1.93
652482--652570	20	4.4	20	88	0	97	21	16	23	38	1.93
652518--652580	20	3.2	20	86	0	54	15	17	22	44	1.86
653054--653152	21	4.7	21	74	8	85	22	33	20	24	1.97
654544--654579	14	2.6	14	90	0	54	30	0	22	47	1.52
654763--654857	33	2.8	33	90	3	136	13	23	20	43	1.87
654829--654922	20	4.7	20	86	2	136	19	21	24	35	1.96
655981--656007	14	1.9	14	100	0	54	7	11	29	51	1.64
656207--656260	24	2.2	24	90	0	81	40	20	16	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657101--657154	20	2.7	20	94	0	90	29	18	22	29	1.97
657100--657164	20	3.2	20	86	0	67	27	20	21	30	1.98
657154--657304	20	7.6	20	95	0	266	21	19	17	40	1.92
657306--657348	21	2.0	21	90	0	68	41	16	23	18	1.89
657396--657446	19	2.7	19	96	0	93	21	21	27	29	1.99
659122--659152	16	1.9	16	93	0	53	32	12	12	41	1.81
659338--659375	14	2.8	13	84	7	58	42	5	0	52	1.24
659338--659381	13	3.3	12	82	17	52	43	6	0	50	1.29
659333--659395	27	2.3	28	73	13	69	42	7	0	49	1.32
659766--659819	20	2.6	21	91	5	83	29	16	20	33	1.95
659838--659901	27	2.4	27	91	0	101	37	15	15	31	1.89
659950--659992	16	2.8	15	86	6	68	27	18	11	41	1.85
660262--660448	94	2.0	92	91	2	266	34	12	6	45	1.69
660610--660650	2	20.5	2	100	0	82	48	0	0	51	1.00
661036--661087	28	2.0	25	85	14	70	13	40	3	42	1.62
661042--661101	28	2.1	28	93	6	104	13	43	3	40	1.60
662268--662319	15	3.5	15	81	0	68	9	65	15	9	1.47
665061--665105	20	2.2	20	96	0	81	31	20	17	31	1.96
665462--665525	33	1.9	33	84	6	85	29	17	28	25	1.97
666155--666251	48	2.0	48	93	0	167	23	9	18	48	1.77
666604--666710	14	8.0	14	76	15	102	38	8	1	51	1.43
666639--666712	19	3.8	19	81	12	80	36	8	1	54	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667078--667213	2	67.5	2	69	12	73	38	6	1	52	1.36
668629--668673	13	3.4	13	81	6	54	28	0	4	66	1.11
668629--668661	14	2.3	15	89	5	50	30	0	0	69	0.88
668685--669109	162	2.6	160	82	6	484	34	11	15	38	1.84
669842--669866	12	2.1	12	100	0	50	40	8	44	8	1.63
674011--674059	12	4.3	11	81	2	53	46	0	0	53	1.00
674011--674058	18	2.8	17	78	9	62	47	0	0	52	1.00
680546--680806	131	2.0	130	99	0	513	31	16	24	26	1.97
682126--682229	33	3.2	33	66	21	92	41	9	25	23	1.84
682722--682822	1	101.0	1	78	0	76	86	0	6	5	0.76
682706--682815	9	11.8	9	74	18	75	84	0	8	7	0.78
682722--682826	11	10.0	11	80	8	87	85	0	6	6	0.78
682705--682815	43	2.8	39	78	13	111	84	0	8	7	0.77
682699--682822	19	6.1	19	75	18	90	83	0	8	7	0.84
684093--684209	55	2.1	55	93	3	200	29	14	28	28	1.95
684205--684904	52	13.6	52	90	3	1096	28	16	25	29	1.97
684205--684904	154	4.5	156	92	3	1150	28	16	25	29	1.97
684205--684904	102	6.8	104	91	3	1096	28	16	25	29	1.97
684210--684960	357	2.1	351	88	5	835	29	16	24	28	1.97
685153--685206	11	4.8	12	81	6	60	42	0	0	57	0.98
685161--685204	14	3.4	14	76	23	51	38	0	0	61	0.96
689075--689099	12	2.1	12	100	0	50	40	8	44	8	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695681--695725	22	2.0	22	100	0	90	26	8	20	44	1.80
703821--703854	2	17.0	2	100	0	68	0	50	0	50	1.00
707364--708082	240	3.0	239	97	1	1352	36	12	13	37	1.82
714668--714763	44	2.2	44	77	3	104	23	19	20	35	1.96
714671--714910	132	1.8	132	85	1	338	28	19	20	31	1.97
714978--715129	44	3.5	44	72	7	137	26	17	23	32	1.97
714967--715132	88	1.9	88	88	0	251	26	18	22	31	1.97
715220--715757	91	5.9	91	91	0	745	24	21	15	38	1.92
716154--716459	66	4.6	67	75	15	303	39	14	21	24	1.91
716154--716460	133	2.3	133	94	1	526	39	14	21	24	1.91

Tables:   1   2   3   4   5