genome.fa.s8355.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008355.1 Hibiscus syriacus cultivar Beakdansim tig00111092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  983659

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 645 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87--121	17	2.0	18	88	5	54	40	20	0	40	1.52
5310--5336	2	13.5	2	100	0	54	48	0	0	51	1.00
5418--5446	2	15.0	2	92	7	51	51	0	0	48	1.00
6702--6732	2	15.5	2	100	0	62	51	0	48	0	1.00
12067--12099	12	2.8	12	100	0	66	69	9	9	12	1.36
13921--13983	32	2.0	32	90	0	99	47	11	17	23	1.79
14127--14185	30	2.0	30	93	0	100	54	6	18	20	1.66
14664--14688	2	12.5	2	100	0	50	48	0	0	52	1.00
20234--20298	32	2.0	32	93	0	112	43	12	21	23	1.86
20810--20845	18	2.0	18	88	0	54	61	0	2	36	1.11
20879--20921	20	2.1	20	82	4	50	62	4	2	30	1.28
32502--32570	34	2.0	34	97	0	129	42	11	13	33	1.80
32896--32957	23	2.8	22	75	20	58	20	6	4	67	1.32
32911--32956	24	2.0	23	83	12	58	19	6	4	69	1.28
33004--33078	4	18.8	4	77	10	55	25	2	0	72	0.98
33012--33091	27	3.0	27	74	15	76	23	5	0	71	1.06
33167--33196	15	2.0	15	100	0	60	20	20	0	60	1.37
35126--35165	18	2.2	18	100	0	80	20	32	12	35	1.90
35686--35724	8	5.0	8	84	6	53	10	17	12	58	1.61
36850--36903	16	3.3	16	80	10	65	83	7	9	0	0.82
36839--36916	23	3.4	22	77	13	77	76	8	14	0	1.00
37516--37566	22	2.3	22	96	0	93	35	27	11	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38426--38530	36	2.9	36	91	2	165	24	23	13	38	1.91
38426--38535	37	3.0	37	90	2	168	26	23	12	37	1.91
38646--38731	36	2.4	36	86	3	111	25	18	13	41	1.88
38714--38772	30	2.0	30	86	6	84	40	16	10	32	1.82
38444--38759	100	3.1	100	92	2	508	31	20	11	37	1.88
38786--38900	37	3.1	36	81	4	149	30	20	11	38	1.87
38942--39056	33	3.5	33	89	5	162	37	19	11	32	1.87
39011--39204	67	2.8	67	82	4	235	28	20	12	39	1.88
39779--40169	105	3.8	103	77	8	327	33	24	20	20	1.97
39914--40169	98	2.5	98	81	5	280	34	24	21	19	1.96
40765--40889	34	3.8	34	72	19	120	42	10	15	32	1.80
41154--41215	23	2.8	22	75	20	58	20	6	4	67	1.32
41169--41214	24	2.0	23	83	12	58	19	6	4	69	1.28
41281--41341	30	2.0	31	87	9	90	22	3	0	73	0.97
41211--41407	39	5.0	39	76	15	149	23	4	1	70	1.15
41213--41398	44	4.3	43	74	16	129	24	4	1	69	1.15
41287--41404	9	13.5	8	69	18	58	16	5	0	76	1.03
41491--41520	15	2.0	15	100	0	60	20	20	0	60	1.37
46428--46505	30	2.6	30	81	0	102	37	8	32	21	1.85
46590--46634	15	2.8	17	74	22	51	48	0	0	51	1.00
46549--46634	36	2.4	37	88	5	124	51	0	0	48	1.00
46933--47024	4	24.5	4	73	10	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46933--47024	6	16.3	6	77	13	70	48	0	0	51	1.00
46933--47024	42	2.2	42	94	0	157	48	0	0	51	1.00
49157--49182	11	2.4	11	100	0	52	23	26	11	38	1.89
50629--50680	20	2.6	20	96	0	95	38	26	13	21	1.90
50736--50929	20	9.6	20	76	8	76	35	25	19	19	1.95
50732--50929	40	5.0	39	81	4	200	35	26	19	19	1.95
50736--50928	60	3.2	60	83	0	251	35	25	19	19	1.95
51310--51380	33	2.2	33	92	0	115	11	22	18	47	1.80
51501--51555	14	3.6	14	73	21	56	41	23	25	9	1.83
51501--51571	33	2.2	33	94	0	124	43	25	22	8	1.81
51567--51664	19	5.7	19	70	22	81	10	24	22	42	1.84
51589--51678	14	5.7	14	74	23	81	8	25	23	42	1.83
51572--51686	33	3.5	33	95	0	212	9	24	20	45	1.81
53381--54038	185	3.5	186	99	0	1293	22	12	18	46	1.83
53381--54038	93	7.1	93	99	0	1293	22	12	18	46	1.83
53381--54038	278	2.4	278	98	0	1291	22	12	18	46	1.83
54082--54210	19	7.3	19	75	17	125	45	28	17	8	1.77
54118--54210	33	2.8	32	91	4	150	46	27	18	7	1.76
54082--54210	52	2.5	52	74	14	140	45	28	17	8	1.77
54730--55078	20	17.5	20	86	4	427	19	18	26	34	1.95
56262--56304	16	2.6	16	85	3	59	72	2	2	23	1.08
56405--56472	16	4.2	15	75	18	57	70	1	4	23	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56416--56470	12	4.7	12	77	6	51	70	1	1	25	1.06
57715--57753	18	2.2	18	86	9	53	61	0	15	23	1.33
57715--57766	28	1.9	27	84	7	70	65	0	13	21	1.26
57865--57932	33	2.1	31	84	10	84	44	5	5	44	1.52
57979--58061	35	2.3	35	84	14	98	43	6	6	44	1.53
57866--58068	110	1.8	110	81	12	256	42	6	5	45	1.54
58000--58072	37	1.9	37	86	10	103	42	5	6	45	1.54
57999--58095	39	2.5	37	79	12	99	42	5	6	46	1.51
58780--59457	84	8.2	84	83	4	747	23	20	25	29	1.99
62825--62869	19	2.4	19	92	3	74	66	6	13	13	1.43
64564--64601	14	2.8	14	88	4	51	76	2	0	21	0.91
64778--64845	16	4.2	15	75	18	57	70	1	4	23	1.13
64789--64843	12	4.7	12	77	6	51	70	1	1	25	1.06
66090--66128	18	2.2	18	86	9	53	61	0	15	23	1.33
66090--66141	28	1.9	27	84	7	70	65	0	13	21	1.26
66168--66231	29	2.2	30	82	2	76	48	7	1	42	1.41
66180--66301	33	3.8	31	72	20	90	45	7	4	42	1.51
66348--66430	35	2.3	35	84	14	98	43	6	6	44	1.53
66235--66437	110	1.8	110	81	12	256	42	6	5	45	1.54
66369--66441	37	1.9	37	86	10	103	42	5	6	45	1.54
66368--66464	39	2.5	37	79	12	99	42	5	6	46	1.51
67797--67837	20	2.1	19	86	4	55	41	2	12	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67831--67865	17	2.0	18	88	5	54	14	11	0	74	1.08
76445--76857	222	1.9	222	93	0	718	27	12	19	40	1.87
93319--93360	21	2.0	20	95	4	75	35	0	0	64	0.94
93897--94013	31	3.8	30	79	5	128	50	5	5	39	1.47
109019--109047	3	9.7	3	100	0	58	68	0	31	0	0.89
112128--112154	10	2.7	10	100	0	54	44	11	0	44	1.39
113857--113899	10	3.9	10	78	21	50	67	18	2	11	1.32
114083--114125	14	3.1	14	79	0	50	60	13	11	13	1.59
114091--114140	24	2.1	24	88	0	73	54	14	16	16	1.72
115152--115184	16	1.9	18	88	11	52	48	3	0	48	1.17
115479--115511	2	16.5	2	100	0	66	48	0	0	51	1.00
115514--115540	11	2.5	11	100	0	54	25	7	0	66	1.17
116931--116958	2	14.0	2	100	0	56	50	0	0	50	1.00
120905--120960	21	2.8	20	87	12	80	25	19	26	28	1.99
123787--123843	26	2.1	27	93	3	98	47	8	7	36	1.62
124778--124811	17	1.9	18	88	5	52	41	0	0	58	0.98
128024--128113	46	2.0	46	80	8	103	51	1	5	42	1.32
130932--130976	21	2.1	21	87	0	63	46	6	11	35	1.66
132058--132117	29	2.1	29	83	0	75	65	8	13	13	1.48
133712--133760	3	17.0	3	87	8	75	65	0	0	34	0.93
134047--134250	43	4.7	43	73	11	148	22	20	32	25	1.98
134010--134297	130	2.2	129	90	1	450	22	19	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134561--134640	35	2.2	36	82	8	92	30	8	20	41	1.82
134899--134943	15	3.0	15	90	0	63	40	8	20	31	1.83
135038--135117	40	2.0	40	85	4	108	36	12	20	31	1.89
135099--135222	63	2.0	63	87	1	178	43	10	14	31	1.79
135455--135580	37	3.6	37	67	23	110	44	11	12	31	1.78
135444--135640	67	3.0	67	92	1	299	44	12	12	30	1.79
135688--135838	29	5.4	28	82	7	166	47	13	10	28	1.75
135703--135835	29	4.8	28	86	5	173	45	14	11	28	1.79
136077--136180	36	3.0	36	78	4	106	34	12	21	31	1.90
136078--136196	36	3.4	36	77	6	102	35	13	21	29	1.92

Tables:   1   2   3   4   5   6