genome.fa.s8355.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008355.1 Hibiscus syriacus cultivar Beakdansim tig00111092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  983659

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 645 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324231--324280	20	2.4	21	80	6	57	58	4	0	38	1.17
326223--326248	13	2.0	13	100	0	52	53	0	0	46	1.00
326192--326278	40	2.1	42	91	6	142	39	2	0	58	1.11
326219--326294	30	2.5	30	80	6	91	35	1	0	63	1.03
326205--326299	43	2.2	43	77	19	101	32	1	0	66	0.99
329352--329381	15	2.0	15	93	0	51	63	0	0	36	0.95
330417--330446	2	15.5	2	93	6	53	50	0	0	50	1.00
333405--333491	31	2.8	31	83	8	99	33	21	22	21	1.97
335854--335890	18	2.1	18	100	0	74	35	16	5	43	1.71
336477--336521	14	3.3	14	84	3	56	66	17	6	8	1.40
336475--336546	37	1.9	37	91	0	117	62	16	9	11	1.53
336496--336540	23	1.9	24	90	4	74	64	13	8	13	1.49
336482--336546	14	5.0	14	75	17	68	61	16	10	10	1.56
344815--344933	39	3.1	39	84	8	154	45	1	16	36	1.58
346213--346283	36	2.0	36	86	5	99	29	29	21	19	1.98
348661--348796	20	6.8	19	76	12	121	37	24	17	20	1.94
348661--348796	40	3.4	40	82	6	152	37	24	17	20	1.94
356623--356711	38	2.3	38	88	0	133	35	15	19	29	1.93
358217--358260	19	2.5	17	85	7	52	56	2	0	40	1.11
358721--358769	23	2.1	23	96	0	89	48	0	4	46	1.20
358748--358786	17	2.4	17	86	4	53	46	0	0	53	1.00
358727--358786	23	3.1	19	86	13	70	46	0	1	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358957--358994	17	2.2	17	90	0	58	55	0	0	44	0.99
358877--358988	42	2.9	37	76	15	111	51	0	2	44	1.21
358958--359008	25	2.1	24	88	3	75	58	0	0	41	0.98
360371--360405	3	11.7	3	93	0	61	62	0	37	0	0.95
361460--361535	31	2.5	31	100	0	152	65	10	5	18	1.41
363961--363999	15	2.6	14	80	11	51	64	2	2	30	1.21
364927--364971	23	2.0	23	86	4	65	55	0	2	42	1.12
365311--365384	29	2.5	30	86	6	107	44	10	12	32	1.76
365774--365835	27	2.3	27	80	5	72	67	6	3	22	1.28
365838--365883	19	2.5	19	86	10	60	52	8	4	34	1.52
367275--367307	16	2.0	17	88	5	50	9	15	6	69	1.34
367861--367920	21	2.9	21	84	0	93	6	28	41	23	1.79
369072--369139	31	2.3	29	80	9	84	29	23	5	41	1.78
372300--372363	29	2.2	30	86	5	87	18	15	9	56	1.66
372338--372514	43	4.3	39	73	13	124	28	14	5	51	1.64
372483--372773	43	6.7	43	75	11	177	27	18	6	47	1.73
372460--372773	130	2.4	126	78	11	319	26	18	7	47	1.74
372842--372872	16	1.9	16	100	0	62	25	6	9	58	1.54
373309--373559	130	1.9	130	88	3	380	29	13	23	33	1.93
373309--373559	65	3.9	65	86	2	344	29	13	23	33	1.93
373825--373874	26	1.9	26	100	0	100	26	4	16	54	1.59
374226--374344	21	5.7	21	78	13	129	23	21	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374225--374344	42	2.9	41	82	8	154	23	21	25	30	1.99
374372--374422	19	2.7	19	96	0	93	23	21	25	29	1.99
379061--379246	91	2.0	92	94	1	329	49	12	6	31	1.66
386455--386523	36	1.9	36	100	0	138	21	20	21	36	1.95
388490--388532	22	2.0	22	85	0	59	46	13	11	27	1.78
392897--392959	2	33.5	2	78	12	71	49	1	0	49	1.10
392908--392970	29	2.2	29	80	8	76	46	0	0	53	1.00
396154--396202	23	2.1	24	96	3	91	42	12	0	44	1.41
396648--396696	21	2.3	21	75	6	55	20	44	22	12	1.84
398683--398731	18	2.7	18	93	0	80	22	18	2	57	1.51
400205--400692	97	5.0	97	84	3	545	31	19	19	29	1.96
402224--402268	22	2.0	23	91	8	74	13	6	8	71	1.31
403107--403778	335	2.0	332	90	4	1048	29	7	22	40	1.82
414818--414883	33	1.9	34	90	9	107	22	18	22	36	1.95
418569--418637	36	1.9	36	100	0	138	21	20	21	36	1.95
428277--428326	24	2.1	24	96	0	91	42	12	0	46	1.41
428802--428835	14	2.4	14	95	0	59	20	41	17	20	1.91
428769--428821	21	2.6	21	72	3	54	18	39	18	22	1.92
428783--428856	35	2.1	35	82	5	87	20	39	20	20	1.93
429855--429924	24	3.0	24	81	6	81	44	18	11	25	1.83
430956--431045	19	4.7	19	100	0	180	31	31	16	21	1.95
432939--433426	97	5.0	97	81	3	518	31	19	19	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435082--435139	26	2.2	27	82	14	77	17	5	6	70	1.28
435935--436628	344	2.0	343	94	0	1201	29	7	21	41	1.81
443731--443786	20	2.8	20	86	0	76	26	16	30	26	1.96
444007--444066	18	3.1	19	79	13	77	48	8	11	31	1.69
446664--446714	20	2.5	20	87	0	66	27	21	25	25	1.99
454519--454569	21	2.5	20	93	6	77	31	9	9	49	1.69
456192--456258	22	3.0	22	100	0	134	26	26	26	19	1.99
456478--456537	30	2.0	31	90	3	95	33	23	6	36	1.81
456553--456622	29	2.4	29	90	0	104	38	14	10	37	1.79
456929--457077	66	2.2	66	86	3	201	17	25	26	30	1.97
457057--457099	21	2.0	21	86	0	59	16	25	27	30	1.97
463138--463204	22	3.0	22	100	0	134	26	26	26	19	1.99
463424--463483	30	2.0	31	90	3	95	33	23	6	36	1.81
463499--463568	29	2.4	29	90	0	104	38	14	10	37	1.79
464004--464046	21	2.0	21	86	0	59	16	25	27	30	1.97
463875--464024	67	2.2	67	86	2	203	17	25	27	30	1.97
468032--468056	13	1.9	13	100	0	50	32	24	20	24	1.98
468044--468313	42	6.5	42	89	0	344	26	20	21	32	1.97
468734--468881	53	2.8	53	82	3	163	33	19	23	23	1.97
474585--474618	16	2.1	16	88	0	50	58	11	14	14	1.63
476929--476968	21	1.9	21	94	0	71	30	15	7	47	1.72
476963--477061	33	3.0	33	94	1	164	32	7	15	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477047--477101	13	4.2	13	75	13	58	34	3	12	49	1.59
477297--477346	21	2.4	21	93	0	82	22	24	28	26	1.99
477665--477696	16	2.0	17	88	11	50	43	21	21	12	1.86
478255--478281	9	3.0	9	100	0	54	22	0	0	77	0.76
478799--478836	2	19.0	2	100	0	76	50	0	0	50	1.00
486015--486042	14	2.0	14	100	0	56	57	7	7	28	1.52
493361--493451	45	2.0	45	91	0	146	31	16	4	47	1.66
494358--494410	21	2.5	21	81	9	63	71	5	0	22	1.06
494358--494406	22	2.2	21	78	7	53	75	6	0	18	1.00
497938--497976	17	2.3	17	90	0	60	10	46	10	33	1.72
499656--500010	176	2.0	177	97	2	676	34	23	13	28	1.92
502473--502507	18	1.9	18	100	0	70	34	5	28	31	1.81
503666--503702	18	2.0	19	89	5	58	18	35	10	35	1.86
507856--507978	26	4.5	28	80	9	110	52	14	4	28	1.60
507856--507953	26	3.5	27	85	10	126	53	14	5	27	1.62
512872--512906	16	2.1	17	94	5	63	37	0	0	62	0.95
513861--513933	31	2.4	31	88	0	110	42	17	10	28	1.83
516404--516438	2	17.5	2	100	0	70	48	0	0	51	1.00
516764--516795	16	2.0	16	100	0	64	25	6	50	18	1.70
516923--516984	30	2.1	30	81	6	72	51	1	4	41	1.33
522210--522261	17	3.1	17	72	5	52	42	11	9	36	1.74
522305--522413	33	3.4	33	91	3	170	45	14	8	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522402--522443	21	2.0	21	90	0	66	50	7	11	30	1.66
524532--524577	25	1.9	25	86	8	69	36	0	28	34	1.58
524703--524752	23	2.1	24	85	10	68	34	16	12	38	1.85
525171--525259	24	3.6	25	80	10	110	33	15	14	35	1.88
525240--525312	17	4.0	17	73	16	65	35	12	9	42	1.75
525216--525313	39	2.4	41	86	6	139	36	13	10	39	1.78
532719--532776	14	3.9	14	73	20	55	29	1	6	62	1.31
533849--533875	14	1.9	14	100	0	54	22	7	3	66	1.33
535514--535690	19	8.7	19	69	16	104	26	5	5	62	1.40
535520--535629	23	5.1	23	75	17	94	25	3	5	65	1.31

Tables:   1   2   3   4   5   6