genome.fa.s8355.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008355.1 Hibiscus syriacus cultivar Beakdansim tig00111092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  983659

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 645 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691214--691294	33	2.5	33	93	0	135	8	22	23	45	1.79
691271--691346	21	3.7	21	85	3	109	11	25	18	44	1.83
691270--691347	41	1.9	41	94	0	138	12	25	17	43	1.85
691426--691496	33	2.2	33	89	0	106	47	16	23	11	1.79
691677--691730	22	2.5	21	78	3	63	20	16	38	24	1.92
691853--691934	40	2.1	40	81	6	96	23	15	23	37	1.93
691876--692068	20	9.6	20	83	3	219	19	20	25	35	1.96
692055--692137	21	4.0	21	73	6	78	26	15	24	33	1.95
692035--692133	42	2.4	43	77	11	100	22	17	23	37	1.94
692542--692573	15	2.1	15	100	0	64	18	25	6	50	1.70
693092--693133	20	2.0	21	86	9	59	30	0	4	64	1.14
697167--697224	30	2.0	29	83	10	73	44	20	18	15	1.86
698153--698215	23	2.6	24	78	19	60	50	1	0	47	1.10
698187--698231	22	2.0	23	86	4	65	44	2	0	53	1.13
698181--698259	31	2.5	32	78	16	83	48	2	0	49	1.14
698199--698300	54	1.9	52	82	7	125	49	0	1	48	1.19
698312--698404	28	3.3	27	70	18	66	46	1	3	49	1.25
698398--698449	23	2.3	23	86	0	68	51	0	1	46	1.12
698538--698603	22	2.8	25	77	15	59	48	0	3	48	1.17
699449--699603	42	3.7	42	90	3	222	23	52	10	12	1.71
705529--705601	36	2.0	38	84	7	98	43	20	0	35	1.52
706657--706694	19	2.1	19	85	5	51	28	15	7	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707682--707716	12	2.9	12	87	12	54	31	0	0	68	0.90
719090--719117	2	14.0	2	100	0	56	50	0	0	50	1.00
727145--727196	3	17.0	3	84	4	59	57	0	0	42	0.98
727137--727200	9	7.2	9	77	8	69	56	0	0	43	0.99
727433--728174	112	6.7	112	95	1	1278	28	18	13	39	1.89
728482--728520	19	2.1	19	95	0	69	20	38	15	25	1.92
728485--728602	57	2.1	56	82	6	141	31	25	15	27	1.95
728468--728619	56	2.5	61	75	17	154	30	25	15	28	1.95
728502--728610	56	1.9	57	88	5	168	32	23	14	29	1.94
729811--729844	14	2.4	14	100	0	68	47	5	20	26	1.73
734421--734476	22	2.7	21	86	10	71	30	21	17	30	1.96
736006--736049	21	2.1	21	86	0	61	9	36	15	38	1.80
737078--737116	19	2.1	19	95	0	69	20	38	15	25	1.92
737064--737224	65	2.5	65	84	3	209	30	25	16	27	1.96
737064--737244	64	2.8	64	82	2	211	29	25	17	27	1.97
738822--739426	92	6.6	92	97	0	1111	35	23	14	26	1.94
740788--740876	7	12.7	7	83	9	110	0	19	0	80	0.70
740789--740875	13	6.9	13	74	20	71	0	19	0	80	0.71
740788--740880	29	3.3	28	81	15	120	0	19	0	80	0.71
740788--740875	36	2.5	33	85	8	113	0	19	0	80	0.71
748199--748230	15	2.1	15	94	0	55	46	9	18	25	1.79
753633--753696	27	2.4	27	87	7	94	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755402--755436	18	1.9	18	88	0	52	28	31	8	31	1.87
757254--757324	29	2.4	29	88	4	108	30	11	36	21	1.88
757349--757382	12	2.8	12	90	4	50	17	50	17	14	1.79
758650--758749	47	2.1	49	90	3	159	50	5	16	29	1.66
765574--765633	31	2.0	30	90	3	93	46	5	20	28	1.71
776080--776104	2	12.5	2	100	0	50	52	0	0	48	1.00
777725--777808	37	2.2	38	80	4	107	16	11	40	30	1.85
777725--777820	37	2.6	37	81	5	95	15	11	42	30	1.82
779757--779820	32	2.0	32	100	0	128	43	9	3	43	1.52
779822--779854	2	16.5	2	100	0	66	48	0	0	51	1.00
782308--782350	21	2.0	22	95	4	79	27	6	4	60	1.43
782586--782625	20	2.0	20	85	0	53	35	15	5	45	1.68
790298--790903	205	2.9	206	97	1	1133	26	17	17	38	1.91
807995--808074	35	2.3	35	86	0	115	25	31	11	32	1.91
809080--809174	31	3.1	31	80	3	102	34	21	16	27	1.95
809308--809343	17	2.0	19	89	10	58	38	11	5	44	1.63
809827--809975	64	2.3	65	85	6	196	28	17	20	33	1.95
811554--811599	21	2.2	21	92	7	76	47	4	0	47	1.21
811548--811601	21	2.3	24	81	15	69	48	3	0	48	1.19
822732--822807	35	2.2	35	97	0	143	32	21	14	31	1.93
824342--824410	29	2.3	31	87	5	97	37	10	14	37	1.80
825998--826044	3	15.7	3	100	0	94	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
826970--827014	23	2.0	23	82	8	56	37	8	8	44	1.67
830882--831023	64	2.2	64	82	2	160	31	23	20	24	1.98
831332--831366	12	2.9	12	100	0	70	34	0	25	40	1.56
831317--831378	24	2.5	24	79	5	72	37	4	19	38	1.73
831523--831584	15	4.1	15	95	0	115	12	19	33	33	1.90
831568--831623	22	2.8	19	75	17	60	26	17	28	26	1.98
837841--837982	64	2.2	64	82	2	160	31	23	20	24	1.98
838290--838325	12	3.0	12	87	0	54	36	5	22	36	1.78
838470--838546	15	5.1	15	100	0	154	14	19	32	33	1.92
839936--839978	21	2.0	21	95	0	77	23	16	16	44	1.86
839941--839985	21	2.1	21	91	0	72	24	15	13	46	1.82
842718--842802	32	2.7	32	71	12	77	25	29	31	12	1.93
842980--843041	32	1.9	32	90	0	97	24	29	25	20	1.99
844075--844131	27	2.1	27	83	0	69	21	12	17	49	1.79
845524--845687	64	2.5	64	80	11	158	33	17	22	26	1.96
846237--846335	22	4.5	22	87	5	137	15	25	28	31	1.95
849138--849183	20	2.3	20	88	0	65	19	19	19	41	1.91
849271--849366	40	2.4	40	85	0	138	20	15	18	44	1.86
849705--849775	20	3.5	20	78	0	79	22	15	16	45	1.85
849770--849816	20	2.3	20	96	0	85	10	19	21	48	1.78
850286--850395	31	3.5	32	75	10	95	8	4	21	65	1.38
850292--850376	30	2.8	30	75	8	75	9	4	21	64	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
851697--851751	28	2.0	27	82	10	67	45	1	10	41	1.50
852339--852414	36	2.1	36	85	4	100	21	30	10	38	1.87
854122--854186	25	2.7	23	73	15	60	64	1	4	29	1.22
857797--857827	12	2.6	12	94	0	53	9	19	48	22	1.78
858477--858504	2	14.0	2	100	0	56	50	0	0	50	1.00
862002--862106	37	2.8	36	79	2	120	40	13	13	32	1.83
862846--862884	18	2.1	18	90	4	60	30	5	0	64	1.15
862854--862919	34	1.9	34	82	11	82	28	6	3	62	1.34
862953--863011	15	3.8	16	79	16	54	13	8	0	77	0.97
862953--863004	25	2.0	26	85	3	70	13	7	0	78	0.94
862953--863004	13	3.8	13	80	12	52	13	7	0	78	0.94
867437--867523	15	5.8	16	73	20	64	79	4	13	2	0.99
867430--867499	16	4.3	15	73	21	61	80	4	14	1	0.94
867430--867522	9	9.9	9	70	20	57	79	5	12	2	0.99
867436--867508	33	2.2	34	80	14	89	80	4	13	1	0.92
867463--867523	6	10.0	6	79	13	54	80	4	13	1	0.95
867457--867523	21	3.2	20	77	14	64	80	4	13	1	0.93
869070--870125	106	10.0	106	89	3	1488	33	24	18	23	1.97
869070--870106	423	2.5	423	91	2	1633	33	24	18	23	1.97
870827--870923	37	2.6	37	90	0	140	41	14	14	29	1.85
871682--871717	18	1.9	19	88	5	56	30	5	0	63	1.17
871789--871839	16	3.2	16	84	13	61	15	7	0	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872422--872491	2	35.0	2	100	0	140	50	0	0	50	1.00
872971--873025	20	2.8	20	82	0	65	50	7	10	30	1.64
872707--873110	202	2.0	202	94	0	700	42	10	11	36	1.75
881462--881521	31	1.9	31	89	0	93	40	5	10	45	1.60
881962--882053	24	3.7	24	86	11	139	53	1	0	45	1.07
881944--882052	52	2.1	52	100	0	218	54	1	0	44	1.11
889297--889339	23	2.0	23	86	9	63	58	2	2	37	1.24
890008--890143	28	4.8	29	80	12	138	39	19	22	17	1.92
890036--890153	55	2.1	58	93	4	206	38	18	20	22	1.93
890623--890681	21	2.8	20	82	7	73	22	0	27	50	1.49

Tables:   1   2   3   4   5   6