Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008355.1 Hibiscus syriacus cultivar Beakdansim tig00111092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  983659

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 645 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
890812--890839
2
14.0
2
100
0
56
50
0
0
50
1.00
891249--891286
19
2.0
20
84
5
51
28
28
0
42
1.56
892006--892064
21
2.8
19
80
14
55
8
6
15
69
1.34
892011--892070
20
3.0
19
79
15
59
8
5
15
71
1.27
893239--893266
3
9.3
3
100
0
56
35
0
0
64
0.94
894198--894360
58
2.8
58
98
0
308
33
6
14
45
1.71
903966--904079
58
2.0
58
84
6
151
36
5
15
42
1.70
903984--904188
58
3.5
58
77
5
155
37
6
12
43
1.68
904259--904349
39
2.3
39
92
0
155
34
6
10
48
1.64
904419--904572
78
2.0
79
92
3
258
35
4
13
46
1.64
904390--904570
39
4.6
39
83
0
218
34
4
13
46
1.65
907883--907909
2
13.5
2
100
0
54
51
0
0
48
1.00
910397--910440
21
2.2
20
91
4
70
59
0
0
40
0.98
912155--912200
21
2.2
21
100
0
92
36
17
17
28
1.92
912212--912252
21
1.9
21
85
5
55
26
19
21
31
1.97
913354--913401
24
2.0
24
83
0
60
22
14
20
41
1.89
920719--920761
20
2.2
20
87
4
61
18
30
27
23
1.98
920723--920804
23
3.8
21
75
12
60
23
21
29
25
1.99
928640--928696
23
2.5
23
91
0
96
29
12
36
21
1.90
929152--929207
21
2.7
21
86
2
78
14
8
41
35
1.77
929241--929292
21
2.5
21
100
0
104
23
28
28
19
1.98
930831--930880
20
2.5
20
100
0
100
32
10
4
54
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
930831--930902
20
3.7
19
89
9
69
33
13
4
48
1.62
931362--931405
12
3.7
12
96
0
79
0
20
4
75
0.98
942816--942885
21
3.1
23
72
17
58
57
0
1
41
1.08
943411--943451
17
2.4
17
87
4
55
58
0
0
41
0.98
964133--964235
3
34.7
3
92
1
172
33
0
0
66
0.99
965626--965674
24
2.1
22
81
7
53
38
2
2
57
1.22
976923--977004
5
15.6
5
72
22
62
80
0
17
2
0.82
976922--977004
16
4.9
16
81
15
96
80
0
16
2
0.81
976919--977004
31
2.7
32
82
10
106
80
0
17
2
0.82
976919--977004
43
2.0
42
86
6
120
80
0
17
2
0.82
976922--976994
17
4.5
15
80
17
76
80
0
16
2
0.82
977733--978284
52
10.6
52
97
1
1018
24
15
23
36
1.93
977733--978284
261
2.1
258
97
1
1032
24
15
23
36
1.93
978919--979554
117
5.5
118
91
4
963
35
14
20
29
1.93
978948--979573
235
2.7
234
91
3
1000
36
14
20
28
1.92
979709--979802
3
31.7
3
86
6
129
34
1
0
64
1.00
980136--980179
21
2.1
21
83
8
54
18
31
27
22
1.97
980266--980292
6
4.5
6
100
0
54
51
14
33
0
1.43
981144--981175
14
2.3
15
89
10
50
31
0
9
59
1.29
982261--982285
2
12.5
2
100
0
50
0
48
0
52
1.00
982800--983041
59
4.1
58
72
12
179
27
17
14
41
1.87
982807--983043
120
2.0
115
81
8
269
27
16
14
41
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
982874--983120
120
2.1
117
79
11
252
25
16
13
44
1.85

Tables:   1   2   3   4   5   6

The End!